Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P10
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0116 + 4420808-4421323,4421367-4421918                           31   0.75 
06_03_0713 + 23811483-23811846,23811964-23812019                       31   0.75 
11_01_0233 + 1801011-1802081                                           29   3.0  
01_06_0248 + 27862048-27864310,27864331-27864776                       28   5.3  
08_02_1044 + 23913849-23915090                                         27   7.0  
01_02_0075 + 10873789-10873871,10873883-10874420                       27   7.0  
01_01_0743 - 5763654-5766902                                           27   7.0  
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903     27   9.2  

>09_02_0116 + 4420808-4421323,4421367-4421918
          Length = 355

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +1

Query: 271 HLPALPPARWGPPRNALPLTLHQHEELATRAEVILRRLLVTDNYDSVSNFISLY 432
           H PA  P R  PPR    LT+   + L T A    RRL + D    +S+F+ LY
Sbjct: 37  HHPAPVPPRGCPPRPHTLLTVPAFQPLITAASSSPRRLSL-DFVPDLSHFVLLY 89


>06_03_0713 + 23811483-23811846,23811964-23812019
          Length = 139

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 395 SVTSNRRRMTSARVASSSCWCS--VRGSAFRGGPHRAGGSA 279
           +   +++ + S RVAS SC CS      +FR   HR GG A
Sbjct: 59  AAAQSKQLLGSPRVASPSCLCSPTTHAGSFRCRLHRGGGGA 99


>11_01_0233 + 1801011-1802081
          Length = 356

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 271 HLPALPPARWGPPRNALPLTLHQH 342
           +LPA PPA    PR   PL LH H
Sbjct: 73  YLPAEPPAAAPRPRRRRPLLLHLH 96


>01_06_0248 + 27862048-27864310,27864331-27864776
          Length = 902

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -3

Query: 368 TSARVASSSCWCSVRGSAFRGGPH-----RAGGSAGRWV 267
           +++RV + S W  V G+A R  PH     RA G   RW+
Sbjct: 799 SASRVNAISPWFYVGGTAIRAAPHAYDGLRARGYVQRWI 837


>08_02_1044 + 23913849-23915090
          Length = 413

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -3

Query: 380 RRRMTSARVASSSCWCSVRGSAFRGGPHRAG-----GSAGRWVSRVS 255
           R  +TSAR+  ++   S R +A  GG  RAG     G +GRW S VS
Sbjct: 308 REIVTSARLRRTTSLQSFRTTAAAGGGARAGRSVRLGQSGRW-SNVS 353


>01_02_0075 + 10873789-10873871,10873883-10874420
          Length = 206

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 326 RGSAFRGGPHRAGGSAGRWVSRVSWASQLGHSAPQRPT 213
           RG+   G     GGS   W + V W  + G +  +RPT
Sbjct: 83  RGAGSDGWRCGGGGSRRIWQAAVGWRRRRGPAVERRPT 120


>01_01_0743 - 5763654-5766902
          Length = 1082

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 268 THLPALPPARWGPPRNALPLTLHQHEELATRAEVI 372
           +HL A PP  W PP+N+ P T  + + LA    ++
Sbjct: 11  SHLRAPPP--WPPPKNSSPRTRVRCDVLAASGHIL 43


>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
          Length = 405

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 392 VTSNRRRMTSARVASSSCWCSVRGSAFRGGPHRAGGSAGRWVSRVSWASQLGH 234
           VT    R+TS++ A  +    +RG    G     GG AG W  RVS   +  H
Sbjct: 226 VTLKEERLTSSKGAGGA---DMRGPHVSGA-RGEGGGAGTWAPRVSGTKRPVH 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,790
Number of Sequences: 37544
Number of extensions: 200185
Number of successful extensions: 720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)