Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P10
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-3|CAA93106.2|  568|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      27   6.2  

>Z68882-3|CAA93106.2|  568|Caenorhabditis elegans Hypothetical
           protein C47E12.3 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 265 LTHLPALPPARWGPPRNALPLTLHQHEELAT 357
           L +LP  PP+++ PP   LP T     E AT
Sbjct: 507 LFNLPPTPPSQYDPPLKPLPRTNSSFCETAT 537


>Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical
           protein D2045.1b protein.
          Length = 634

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 333 QREGQRVPGRAPPRGRQCR*VGQSRFLGESTRPLGSP 223
           Q++  R  G  PP+ +Q +   Q +F GE +RP   P
Sbjct: 376 QQQQPRYQGPPPPQQQQQQQPQQQQFSGEQSRPQSHP 412


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 333 QREGQRVPGRAPPRGRQCR*VGQSRFLGESTRPLGSP 223
           Q++  R  G  PP+ +Q +   Q +F GE +RP   P
Sbjct: 701 QQQQPRYQGPPPPQQQQQQQPQQQQFSGEQSRPQSHP 737


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 333 QREGQRVPGRAPPRGRQCR*VGQSRFLGESTRPLGSP 223
           Q++  R  G  PP+ +Q +   Q +F GE +RP   P
Sbjct: 701 QQQQPRYQGPPPPQQQQQQQPQQQQFSGEQSRPQSHP 737


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,548,122
Number of Sequences: 27780
Number of extensions: 130362
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)