Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P08
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    28   3.4  
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    27   5.9  
02_02_0532 + 11227074-11227349,11227567-11227969,11228228-112285...    27   7.8  
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924...    27   7.8  

>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 372 KKPRSHLHHYHQEGGRHR 425
           ++P+SH HH+H  G R R
Sbjct: 164 QQPQSHHHHHHHSGSRKR 181


>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 302 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPLSSGRRKA 421
           M T P       +A   A  GS  +T  PPSP   GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581


>02_02_0532 +
           11227074-11227349,11227567-11227969,11228228-11228506,
           11228736-11228838,11228932-11229013,11229260-11229370,
           11229621-11229691,11229791-11229803
          Length = 445

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 471 RPHLRKVNDPSK-RFGTYAFRLPDDNGEGGFWVSYED 364
           R H  K  D  K +F    FR     G G FW+ +ED
Sbjct: 298 RSHNSKSKDDQKEKFMVSVFRRDAFGGNGYFWLDFED 334


>01_02_0015 +
           10191793-10191957,10192085-10192229,10192331-10192419,
           10193009-10193063,10193607-10193692,10194006-10194065
          Length = 199

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 366 DPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDK 253
           D +  G  A  +     G   ++  ++D+FR LCTGDK
Sbjct: 71  DVEVGGEPAGRIVIGLFG--EVVPKTVDNFRALCTGDK 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,354,470
Number of Sequences: 37544
Number of extensions: 228210
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)