Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P05
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   3.3  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   5.7  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   7.5  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    24   9.9  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    24   9.9  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 245 PFGVALNHPYCARVQNSLPYFPSEHHKSQIYFLHPRNFWN 126
           P+ +AL     A +Q     + +E  KS ++ L PRNFWN
Sbjct: 799 PYILALKESADALMQFGSYEYATELLKSCLFLL-PRNFWN 837


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 223 IHIVRAFKIPSHISPLSTIKARFTSFIR 140
           ++I+R FK+ S  S LS IK      +R
Sbjct: 267 LNIIREFKLESDYSSLSAIKGHLFKLMR 294


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 239 QMGGLVKQVQGELGEGRKTRTGSVFTAANSKGVYGSGNYDLSNLEGRN 382
           Q+ GL +  Q  +  GR+       TA    GV+  G++ +++  G N
Sbjct: 277 QISGLKRPPQATVVIGRQITRFGTLTARWKTGVWSLGSWGIASPRGAN 324


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 269 GELGEGRKTRTGSVFTAANSKGVYGSGNYDL 361
           G LG+G  +  G     A+S  VY    +DL
Sbjct: 121 GPLGQGIASAVGLAIGKAHSAAVYNKPGFDL 151


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 141 RMKE-VNLAFMVLRGEIWEGI 200
           R KE V+LAF++ + + W+GI
Sbjct: 86  RQKEKVHLAFLIQQDDFWKGI 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,944
Number of Sequences: 5004
Number of extensions: 30079
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)