Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P05
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846...    28   3.2  
02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890...    27   7.4  
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584...    27   9.8  

>10_05_0038 -
           8458901-8459207,8459367-8459705,8459710-8459913,
           8460374-8460492
          Length = 322

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 10  IYSNITVKRRYGA-LTAFSCDISFSCGKT*TVPRKRRF 120
           +Y   T +RR GA L+  +C++S  C     +PR+ R+
Sbjct: 134 VYQEKTRRRRRGAKLSTATCEVSLPCATMVRMPRRLRW 171


>02_05_0959 +
           33086498-33086544,33087295-33087967,33088665-33089058,
           33089140-33089210,33089373-33089497,33089705-33089821,
           33094128-33094238,33094321-33094413,33094726-33094984,
           33095067-33095189
          Length = 670

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 266 QGELGEGRKTRTGSVFTAANSKGVYGSGNYDL 361
           Q  + +GR +RT  +  A N KG+ G G  D+
Sbjct: 637 QASMDDGRVSRTDILPPADNEKGILGPGPADM 668


>07_03_1175 -
           24555965-24556117,24557809-24558264,24558270-24558436,
           24558468-24558756,24559620-24559726,24559841-24559909,
           24560001-24560109
          Length = 449

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = +2

Query: 161 GFYGAQRGNMGGNFERAHNMDGLAQHQMGGLVKQVQGELGEGRKTRTGSVFTAANSKGVY 340
           G YGA  GN G NF            ++ G      G+    R +R+ S  T A S  V 
Sbjct: 376 GQYGAAHGNNGSNFSHGGGFGAQMFIRIAGTGFSTTGK--SIRSSRSHSASTVAVSSAVS 433

Query: 341 GSGNYDL 361
            +   DL
Sbjct: 434 SASIVDL 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,771,311
Number of Sequences: 37544
Number of extensions: 189885
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)