Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P03
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    29   0.57 
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   5.3  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   7.0  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   9.2  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    25   9.2  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   9.2  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 203 LSFSQ*NSHGFSYVLPSDPQTGL*IFPQIHNGGGRAVT 90
           L++ Q +++G SYVL +DP      F +  NG  R  T
Sbjct: 289 LAYEQADANGISYVLATDPDADRFAFAEKINGAWRRFT 326


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 236 PHARWASPATVPWNMPPSVALTEKLTPTNVHWNAP 340
           P  R      V W MP  + +       N+HW AP
Sbjct: 364 PEQRLPLMMAVGWLMPAGIFVFAWTNSPNIHWIAP 398


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = +3

Query: 219 DNREKHRMRGGHPLLLY-------LGICP 284
           DNR+   +R G P++LY       +G+CP
Sbjct: 697 DNRQVFMVRNGEPMILYPEESAYEMGLCP 725


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +2

Query: 125 EKSIVPSAGQMVRRTRTRVN--FTAKRTRHTA--I*QS*KTPHARWASPATVPWNMPPSV 292
           EK++ P        T   +   F+ KR R     + +  K+P  + ASP     N+ PS+
Sbjct: 69  EKALTPDLRDTKIHTSLPITTPFSKKRAREAKNILLKPFKSPLRQTASPQVADTNLKPSL 128

Query: 293 ALT 301
           A+T
Sbjct: 129 AVT 131


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 407 KLASLAPWHSPSCSIFRDGIIF 342
           KL    PW    C IF D I++
Sbjct: 214 KLQGFPPWQLRLCEIFHDPILY 235


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 204 DTQQYDNREKHRMRGGHPLL 263
           D   Y NR   +MRG  PLL
Sbjct: 94  DNPYYKNRPPQKMRGNKPLL 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,860
Number of Sequences: 5004
Number of extensions: 52939
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)