Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_P03
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0379 + 43177978-43178572,43178643-43178674 34 0.081
01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639... 31 0.43
01_05_0271 + 20276965-20278674 31 0.76
01_06_1092 + 34469732-34470118 30 1.0
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 29 3.1
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979 28 4.0
08_01_1007 - 10201181-10201298,10202180-10202484,10202577-102027... 28 5.3
03_05_0693 + 26810711-26810786,26810915-26810992,26811659-268118... 28 5.3
12_01_0415 + 3292576-3293727 27 7.1
09_01_0053 + 873918-874411,875255-875492,875682-875702 27 9.3
06_01_0064 + 542101-542291,542391-542453,542559-542675,542763-54... 27 9.3
>01_07_0379 + 43177978-43178572,43178643-43178674
Length = 208
Score = 33.9 bits (74), Expect = 0.081
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 223 LSYCCVSCPFRSKIH-TGSRTSYHLTRRRDYRFFRKYITA 107
L Y C C FR+ T S+T +HL R +YR++ Y+ A
Sbjct: 157 LFYSCACCAFRNTATATSSKTIFHLHPRWEYRWYLLYLCA 196
>01_01_0010 -
62670-62783,62877-63020,63339-63431,63665-63779,
63902-64152,64248-64431,64694-64950
Length = 385
Score = 31.5 bits (68), Expect = 0.43
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -2
Query: 458 PSLPQTGSFSRVHIHGCKLASLAPWHSPSCSIFRDGIIFWVHSSEHLLA*VFPL 297
PS FS V I+ C L L +S S +DG++F+ + H LA + PL
Sbjct: 190 PSTYHRYRFSAVPIYECTLQGLQAAYSGSTPYVKDGLLFY-NKHAHYLAGITPL 242
>01_05_0271 + 20276965-20278674
Length = 569
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Frame = +2
Query: 377 ANARELNWRVYIRVYARARKIQFAGATAS---LNSNLCLLK-CASLSKPSLS 520
A+AR L+ R + ++AR R+ + + ATA+ ++ C+L+ CA S+P ++
Sbjct: 87 AHARRLDLRAALALFARMRRSRSSAATATAPDAHTFACVLRACADCSRPDVA 138
>01_06_1092 + 34469732-34470118
Length = 128
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 388 GAKLASLHPCICTREKDPVCGSDGVT 465
G A L P C R DPVCG+DGVT
Sbjct: 49 GGSEAQLCPVRCFRP-DPVCGADGVT 73
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 160 YHLTRRRDYRFFRKYITAVAELLPSIL 80
YHL R DY ++R+++ V ELL + L
Sbjct: 864 YHLLRLYDYFYYREHLLIVCELLKANL 890
>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
Length = 158
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -3
Query: 301 R*SHRRGHIPRYSSRGCPPRMRCFSRLSYCCVSCPFRSKIHTGSRTSYHLTRRRD 137
R S RR + S+ P + + RL CC++ S + G H +RRD
Sbjct: 43 RESRRRCALGGASAASESPPLHLYQRLPKCCITSHRCSTLRAGYPADLHGQKRRD 97
>08_01_1007 -
10201181-10201298,10202180-10202484,10202577-10202726,
10202954-10202956
Length = 191
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Frame = +1
Query: 310 YANKCS--LECTQKIIPSL----KMEHDGECQGAKLASL 408
+ NKC +EC QK P L K+ DG CQGA L L
Sbjct: 125 FENKCKELIEC-QKASPQLLLTAKVTQDGSCQGAILDQL 162
>03_05_0693 +
26810711-26810786,26810915-26810992,26811659-26811821,
26811889-26811923,26812179-26812343,26813458-26813504,
26814166-26814333,26816024-26816134,26816413-26816538,
26816935-26817087,26819060-26819173,26819882-26820052,
26820140-26820219,26820648-26820786
Length = 541
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 413 RVYARARKIQFAGATASLNSNLCLLKCASLSKPSLSIE 526
R+Y+ A ++ + AT N +LC L+ + K L E
Sbjct: 408 RIYSEALELDYFDATLYSNRSLCYLRIGEVQKALLDAE 445
>12_01_0415 + 3292576-3293727
Length = 383
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 110 GGGRAVTEYISAAAIRRIPSLFILC 36
GGG E +S A IRR+ FILC
Sbjct: 38 GGGGGGEEILSVAWIRRLLEAFILC 62
>09_01_0053 + 873918-874411,875255-875492,875682-875702
Length = 250
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 239 HARWASPATVPWNMPPSVALTEKLTPT 319
HA+W+ ATV + P + + E+L T
Sbjct: 192 HAKWSPAATVTFMYEPEIRINEELMET 218
>06_01_0064 +
542101-542291,542391-542453,542559-542675,542763-542892,
543010-543168,543839-543990,544313-544436,544629-544669,
545512-545757,546010-546126,546683-547097,548698-548849,
548960-549104
Length = 683
Score = 27.1 bits (57), Expect = 9.3
Identities = 24/79 (30%), Positives = 35/79 (44%)
Frame = -1
Query: 471 LLSDAVAPANWIFLARAYTRM*TRQFSSLAFAIMFHLQRRYNLLGAFQ*TFVGVSFSVRA 292
LL++ V A W+ L R +TR +S+ AF +F + GA + S S+ A
Sbjct: 517 LLANVVGFALWLMLQRKFTRKYPAIYSATAFMSLFSCLQ----AGALALSIQRSSISIWA 572
Query: 291 TDGGIFQGTVAGDAHLACG 235
G I TV +A G
Sbjct: 573 LKGKIEIATVVYCGVVASG 591
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,212,909
Number of Sequences: 37544
Number of extensions: 375686
Number of successful extensions: 1019
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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