Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P02
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    64   1e-11
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    62   5e-11
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    25   4.3  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   4.3  

>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
 Frame = +3

Query: 60  SLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPL 239
           ++ENL  V+   G SLE ++K  I L ++DDF  +N++Y E  P   PAR T    K+PL
Sbjct: 52  TIENLAEVLRVAGSSLEKLVKVNIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPL 111

Query: 240 NA---AVEIEAIA 269
           ++    +EIE IA
Sbjct: 112 SSKGGKIEIECIA 124


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 61.7 bits (143), Expect = 5e-11
 Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
 Frame = +3

Query: 63  LENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPLN 242
           L NL+ V+   G SL  ++K  I LA+MDDF  VN++Y E  P   PAR+   V  +PL+
Sbjct: 89  LLNLQEVLTEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPLS 148

Query: 243 ---AAVEIEAIAL 272
                +EIE IAL
Sbjct: 149 TQGVKIEIECIAL 161


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 36  WSGCTDAPSLENLKHVVEAGGGSLESVIKTTILLA 140
           W    D  SLE ++H+ E  GG++  V    I +A
Sbjct: 57  WISDLDNSSLEVVRHLGEGNGGAVSLVKHRNIFMA 91


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 142 IWTIFNALIKFMLNIFLKIALHGL 213
           IW  F AL+  M+ +FL   +HGL
Sbjct: 77  IWYPF-ALLALMVGVFLSFVMHGL 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,478
Number of Sequences: 5004
Number of extensions: 36361
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)