Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_P02
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102...    89   2e-18
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371           30   0.79 
08_02_0075 - 11953723-11956203,11958213-11958512                       29   2.4  
02_02_0497 + 10961079-10963824,10964182-10964282,10964759-109648...    27   5.6  
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895...    27   9.7  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    27   9.7  

>07_03_0593 +
           19808148-19808310,19809416-19809531,19810129-19810202,
           19810286-19810335,19810498-19810592
          Length = 165

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 39/69 (56%), Positives = 54/69 (78%)
 Frame = +3

Query: 63  LENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPLN 242
           ++N+  +++A G S  SV+KTTI+LA++ DF+ VN+IYA+YFP   PAR+TYQV  LPLN
Sbjct: 95  MKNMGEILKASGASYSSVVKTTIMLADLQDFKKVNEIYAKYFPAPAPARSTYQVAALPLN 154

Query: 243 AAVEIEAIA 269
           A +EIE IA
Sbjct: 155 ARIEIECIA 163


>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
          Length = 1165

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 30  IWWSGCTDAPSLENLKHVVEAGGGSLESVIKTTILLAN 143
           IW S   D   ++ LKH +E  GG+ E     T+LL N
Sbjct: 236 IWLSVNQDVNEIDLLKHAIEQFGGNHEHCRADTVLLEN 273


>08_02_0075 - 11953723-11956203,11958213-11958512
          Length = 926

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 36  WSGCTDAP----SLENLKHVVEAGGGSLESVI 119
           WSG  D P    +L NL+H+   G GSL S I
Sbjct: 660 WSGLNDLPKDMSNLVNLRHLFVPGSGSLHSKI 691


>02_02_0497 +
           10961079-10963824,10964182-10964282,10964759-10964800,
           10966918-10966986
          Length = 985

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 274 LRAIASISTAAFRGSLVTWYVARAGQFLGKY 182
           +RA+ SI  ++  G +VTW    AG  + +Y
Sbjct: 354 MRAVESIFRSSKMGDIVTWNTVIAGYVMNRY 384


>07_03_1621 +
           28187846-28187915,28189214-28189293,28189485-28189550,
           28189801-28189848,28189967-28190034,28190107-28190179,
           28190284-28190445,28190620-28190814,28191114-28191190,
           28191280-28191481
          Length = 346

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 365 YDSFQNTLQNINILSACTRTRSSFGDDEV 279
           + S+ NT+  + I SA  + R S+GD  V
Sbjct: 141 FSSYNNTILRLAITSAVHKARQSYGDINV 169


>04_04_1571 +
           34504087-34504421,34505002-34505731,34506091-34512077,
           34512493-34513964,34514114-34514377,34514761-34514978,
           34515759-34516030,34516190-34516559,34516578-34516797,
           34516819-34518931,34518941-34519193,34519269-34519401,
           34520597-34521114,34521207-34522115,34522195-34522368,
           34522833-34522882,34523963-34524035,34524413-34524477,
           34524736-34525522,34525622-34525878,34525989-34526109,
           34526315-34526956
          Length = 5320

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 281 PRHHRSWTLSLCTHLVY*YFVKYFENCHTCLDSKNIHYYEFLL 409
           P+ H  + L + T     +F+K FEN  T   S+ +   E+ L
Sbjct: 520 PKFHSKYMLKIVTPATVRHFLKDFENLGTLEKSQKLILLEYCL 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,894
Number of Sequences: 37544
Number of extensions: 230728
Number of successful extensions: 510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)