Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_P01
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1398 - 33245268-33245876,33247516-33247608,33247639-332478... 31 0.82
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 30 1.4
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 30 1.4
05_03_0113 + 8526595-8527440,8527662-8528357 29 1.9
02_05_1178 + 34758306-34758411,34759449-34759627 29 2.5
10_06_0132 + 11073057-11073345,11073899-11073903,11074358-110744... 28 4.4
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 28 4.4
03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017... 28 4.4
02_04_0335 + 22117902-22119869 28 4.4
01_05_0739 + 24807181-24809121 28 4.4
02_04_0452 + 23044190-23045227 28 5.8
01_05_0352 + 21271835-21271928,21272029-21272087,21272453-212726... 28 5.8
08_02_1289 - 25923916-25924586,25925148-25926630 24 6.4
05_03_0295 - 11830767-11831309,11831820-11831951,11832322-118323... 27 7.6
04_03_0969 + 21331989-21332674,21333090-21333194,21333269-213333... 27 7.6
03_04_0168 + 17953848-17954585 27 7.6
01_01_0452 - 3357687-3358332,3358779-3359641 27 7.6
>04_04_1398 -
33245268-33245876,33247516-33247608,33247639-33247827,
33248146-33248496
Length = 413
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = -2
Query: 306 GSRRHELSQP-PGIVS--RPGSPPCRSRGAPTRR 214
GS++ +L++ PGI+ RP SPP SRG+ RR
Sbjct: 5 GSKKRKLAEEDPGIIGAGRPPSPPSGSRGSADRR 38
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 336 EINLDDPCMKVHCSAGRVCEINEHGEAICNCIKEC-PYETDSRRKVCTNFNETW 494
+IN +D K +A VCE + GE + +C C + D R C + E W
Sbjct: 593 QINGEDHERKEEAAAAAVCEGSGGGERVVDC--ACGAVDDDGERMACCDICEAW 644
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 348 DDPCMKVHCSAGRVCEINEHGEAICNCIKE 437
DD C K+ GRV E N+ E IC+ I E
Sbjct: 212 DDFCPKIEIDGGRVYEQNKCWEDICHAIAE 241
>05_03_0113 + 8526595-8527440,8527662-8528357
Length = 513
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 194 GASPRGHLRVGAPRERHGGEPGRETIPGG 280
G PRG GA R GG PGR GG
Sbjct: 71 GIRPRGSRSFGARRGGFGGRPGRSGFGGG 99
>02_05_1178 + 34758306-34758411,34759449-34759627
Length = 94
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 324 HRVTHSGSRRHELSQPPGIVSRPGSPPCRSR 232
HRVT +GS RHE S+ + S P PP S+
Sbjct: 61 HRVTQAGSSRHEPSKRLALPSSP--PPLESQ 89
>10_06_0132 +
11073057-11073345,11073899-11073903,11074358-11074404,
11074843-11074967,11078036-11078592
Length = 340
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1
Query: 355 GSSRLISLSGASRDSFRISETRALSASWNRLSSRLSAMP 239
G S +SLS A + ++E R L A +R SSR SA P
Sbjct: 11 GLSHSLSLSRADLAAVVVAEPRLLYAKADRESSRFSARP 49
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -2
Query: 396 SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTR 217
+H GRRC L CT + ++ + H G RR E P +R S C G +
Sbjct: 374 AHGGGRRCEELGCTKSAE--GKTDYCIAHGGGRRCEHDGCPK-AARGKSGRCIKHGG-GK 429
Query: 216 RC 211
RC
Sbjct: 430 RC 431
>03_06_0742 +
35900505-35900519,35901230-35901281,35901647-35901772,
35902303-35902613,35902745-35902988,35903726-35903976,
35904071-35904277,35904546-35904713,35904798-35905127,
35905266-35905400
Length = 612
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 446 VWTLLDAVADSFPVLVDLTDTAGAAVHFHARIVKIDFIVRSI 321
VW + FP L +D A A+ F + VK+D+ +S+
Sbjct: 169 VWVYKKTSEEKFPTLKKYSDKAPASDKFASHEVKVDYEYKSV 210
>02_04_0335 + 22117902-22119869
Length = 655
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 396 SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRR 295
+H GRRC L CT + +H + H G RR
Sbjct: 307 AHGGGRRCMQLGCTKSAE--GKTDHCIAHGGGRR 338
>01_05_0739 + 24807181-24809121
Length = 646
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 396 SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRR 295
+H GRRC L CT + +H + H G RR
Sbjct: 306 AHGGGRRCQFLGCTKSAE--GRTDHCIAHGGGRR 337
>02_04_0452 + 23044190-23045227
Length = 345
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 336 HCQEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPT 220
H H +HS SR H S P + P PP + A T
Sbjct: 178 HGHAHSHSHSHSRAHNPSTRPPTSAPPPPPPAAASSATT 216
>01_05_0352 +
21271835-21271928,21272029-21272087,21272453-21272641,
21273568-21273738,21274542-21274694
Length = 221
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 216 SESEHLENGMAESLDERRFQEAERARVSEILNESRD 323
S E LE+GMAE+L Q++ R++E N++ D
Sbjct: 100 SREELLESGMAETLGVSADQKSRLLRITEKQNKTTD 135
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 23.8 bits (49), Expect(2) = 6.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 376 APAVSVRSTSTGKLSATASRSVHTKPTLGA 465
+P + +T+TG + A TKPT G+
Sbjct: 263 SPTAAAETTTTGTVPAEEGTQGATKPTKGS 292
Score = 22.2 bits (45), Expect(2) = 6.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 445 TKPTLGARCAQTSTRPGH 498
TKPTL + A +T+P H
Sbjct: 332 TKPTLPSAPASPATKPTH 349
>05_03_0295 -
11830767-11831309,11831820-11831951,11832322-11832375,
11842285-11843169
Length = 537
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 133 WTSASTVQMTATTRVNTNSLFILTPWLICVVL 38
W T T T +++ N +TPW I +VL
Sbjct: 413 WLMDRTDPKTMTIQISENKKIAITPWKISIVL 444
>04_03_0969 +
21331989-21332674,21333090-21333194,21333269-21333391,
21333458-21333628,21333710-21333839,21333926-21334135,
21334700-21334855
Length = 526
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 330 QEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTR 217
+EHR+T ++H+ QPP R G P R +R
Sbjct: 120 KEHRITFR-EQQHQPPQPPPYHQRSGGPSSRGGSGESR 156
>03_04_0168 + 17953848-17954585
Length = 245
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 137 TSSTPSALTYDDYGAADVGGASPRGHLRVGAPRERHGGEPGRETIP 274
T+S + DD A GG SPR PR +HGG G + P
Sbjct: 5 TASFKHVVDDDDPAARGTGGGSPR------QPRRKHGGGGGGKINP 44
>01_01_0452 - 3357687-3358332,3358779-3359641
Length = 502
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +3
Query: 216 SESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMKVHCSAGRVCE 395
S+ HL++ +SLDE+ E V +L R P+ +++ P ++H + V
Sbjct: 77 SKPVHLKSYTQQSLDEQEMLELFVDIVDWVL---RSGPNKKLSFQFPRAQIHGNLKDVFN 133
Query: 396 INEHGEAICNCIKECPY 446
I A CI E P+
Sbjct: 134 IVFLSLAFLVCIYEAPH 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,523,934
Number of Sequences: 37544
Number of extensions: 332235
Number of successful extensions: 1356
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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