Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_O24
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 29 0.25
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 29 0.33
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 1.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 3.1
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 3.1
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 25 3.1
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 3.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 5.4
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 5.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 24 7.1
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 24 7.1
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 7.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 24 9.4
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 24 9.4
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 29.1 bits (62), Expect = 0.25
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -3
Query: 324 LPPKFEVSP--AGPKTLVPYACPSNLPRSSLNNCRVYPALPNNPSSFCPSVPNTFPLP 157
+P KF ++P A + P + +S+++ + A+P P +F P V N PLP
Sbjct: 143 VPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVPPVNNASPLP 200
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 28.7 bits (61), Expect = 0.33
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 65 MPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKV 172
+PPS+ +YP Y FS AR R V K+I G++
Sbjct: 667 VPPSHNGQYPGLYLFSNPARMVRPV---KHISTGEL 699
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 1.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 321 PPKFEVSPAGPKTLVPYACPSNLPRSSLNNCRVYPAL 211
PP+F S AG + PS+L SS+++ RV P++
Sbjct: 143 PPQFFHSEAGERPTPSVGAPSSL-ASSMDSVRVAPSM 178
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 3.1
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -3
Query: 306 VSPAGPKTLVPYACPSNLPRSSLNNCRVYPALPNNP-SSFCPSVPNTFP 163
V P P + PS+ P ++ PA+PN P S PSV P
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPP 1506
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 225 VYPALPNNPSS-FCPSVPNTFP 163
V P +P +PSS F P P TFP
Sbjct: 306 VSPNIPVSPSSSFVPMYPTTFP 327
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 3.1
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 14 LQEFGTRILACVYAQVSMPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKVFGTLGQN 193
L EFGT+ILA V +VS + + K ARH + + IG +V +
Sbjct: 78 LIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEK-ARHLIKLYEAEGIGRERVLIKIAST 136
Query: 194 DDGL 205
+G+
Sbjct: 137 YEGI 140
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 220 SSFTE*SIVILSECTEYFSVAY 155
S FTE S + SEC YF+ +
Sbjct: 1273 SDFTEDSFTLTSECLRYFNYGH 1294
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 24.6 bits (51), Expect = 5.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 339 LDQSNLPPKFEVSPAGPKTLVP 274
LD S L PKFEV+P L P
Sbjct: 282 LDDSYLSPKFEVAPGQIVELSP 303
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 231 CRVYPALPNNPSSFCPSVPNTFP 163
CRV P LP+ S +C + FP
Sbjct: 484 CRVRPLLPSEESEYCIADVLQFP 506
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 186 DKMTMDYSVKLDTRGSYSMRIAVSWKGKHT-APGFWVRQATPQTS 317
D++ +DY +L R + +++ + K KH + W TP+++
Sbjct: 389 DELPVDYEFELKLRKKQTTKVSGTPKSKHAGSTQEWHSHTTPRST 433
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 62 SMPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGK 169
SM +Y+ R + FSK H RDV K G K
Sbjct: 145 SMKAAYRIR-KTFLSFSKMMEHVRDVQHKKETGEIK 179
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.2 bits (50), Expect = 7.1
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 314 SLRCRLPDPKPW 279
S CRLP P+PW
Sbjct: 265 SFTCRLPLPEPW 276
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 23.8 bits (49), Expect = 9.4
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Frame = -3
Query: 336 DQSNLPPKFEVSPAGPKTLVPYACPSNLPRSSLNNCRVYP------ALPNNPSSFCPSV 178
D+S+LP K +SP T+ + +L LN P LP P S PS+
Sbjct: 198 DESDLPEKRLLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWMIITVLPVPPPSVRPSI 256
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -3
Query: 255 LPRSSLNNCRVYPALPNNPSSFCPSVPNTFPLPMFLSHV 139
+P L N + A+P P+ P +P +P+P + ++
Sbjct: 573 IPSIVLPNSAMPSAMPMYPTPTMPYIPVGYPVPGYTPYM 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,757,578
Number of Sequences: 5004
Number of extensions: 37239
Number of successful extensions: 118
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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