Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_O22
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 31 0.32
05_01_0149 + 989698-991797 31 0.42
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340 30 0.97
03_02_0583 + 9635002-9637299 29 1.7
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 28 3.9
08_02_0416 + 16902153-16902430,16903089-16903143,16903174-169032... 27 5.2
06_03_0830 + 25159758-25162460 27 5.2
02_01_0654 + 4860897-4860932,4860973-4861161,4861394-4861597,486... 27 6.9
05_01_0147 - 981697-983739 27 9.1
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 27 9.1
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 31.5 bits (68), Expect = 0.32
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 59 FTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDIS 208
FT ++N G D+ ++Q+ D+ +G+ P K C+VTC N+ +T+DI+
Sbjct: 124 FTLGYARLNITGC-DFDIYQVLDQ----SGNVPAKLCNVTCPNRGITEDIA 169
>05_01_0149 + 989698-991797
Length = 699
Score = 31.1 bits (67), Expect = 0.42
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 117 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 218
RS TNTG P + R+ T +V + L T+ W+L
Sbjct: 401 RSFTNTGRMPELFVMRLGTIMVTGFILATIFWRL 434
>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
Length = 369
Score = 29.9 bits (64), Expect = 0.97
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -1
Query: 187 LITSHVAILSRSG---PGAAPVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVLDKADPVTH 17
++ +A+L G G A + V+ E V+R+ + HF KP +++ D A PV+
Sbjct: 81 MVVVDLAVLEGHGLEEEGDAELLVLRSGEWTVTRAPVAHFVGRADKPPSWITDMAIPVSE 140
Query: 16 Q 14
+
Sbjct: 141 R 141
>03_02_0583 + 9635002-9637299
Length = 765
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 117 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 218
R+ TNT P L R+AT +V ++ L T+ W+L
Sbjct: 466 RAFTNTRRTPELFLIRLATVVVTAFILATVFWRL 499
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 71 IGKVNKNGSRDYG--LFQINDKYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKIYKR 244
+ V +G R G +F++ D+Y G HV Q++TD+ SV T A + +
Sbjct: 447 LDSVECSGDRKDGKYIFELVDRYIEEIGEQ-----HVV--QVVTDNASVNTTAASLLTAK 499
Query: 245 HKFDAWYGWKNHC 283
W G+ HC
Sbjct: 500 RPSIFWNGYAAHC 512
>08_02_0416 +
16902153-16902430,16903089-16903143,16903174-16903232,
16903565-16903655
Length = 160
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 287 VDSDFSIRTKRQTCGVCKSSLRT 219
V + ++ T+ QTCG K SLRT
Sbjct: 82 VATPHTVETQHQTCGAVKQSLRT 104
>06_03_0830 + 25159758-25162460
Length = 900
Score = 27.5 bits (58), Expect = 5.2
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 38 VENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTCNQLLTDDISVAA 217
+ ++SG F+ K + K G D Q ++ C T ST + L+ I+VAA
Sbjct: 482 ITDDSGTFSRKHTRSMKLGGIDLNENQCTEEVDCHTKSTLSNSIN------LSTPIAVAA 535
Query: 218 TCAKKIY-KRHKFDAWYGWK 274
+ ++ R F+ GWK
Sbjct: 536 SRTSSVFPARLHFEGELGWK 555
>02_01_0654 +
4860897-4860932,4860973-4861161,4861394-4861597,
4862503-4862604
Length = 176
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -1
Query: 202 VVSQ*LITSHVAILSRSGPGAAPVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVL 41
+V++ L TS V + PG +PV +D+ +V S I ++F+G S+ L
Sbjct: 111 LVAKALTTSAVPYYQATSPGQSPVLALDV--FLVQASANIILSHFLGLASSLEL 162
>05_01_0147 - 981697-983739
Length = 680
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 117 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 218
R+ TNT P + R+ T +V + L T+ W+L
Sbjct: 382 RAFTNTRRMPELFVMRLGTIMVTGFILATIFWRL 415
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 157 RSGPGAAPVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVLDKADP 26
+S G P L ++ +S LI + +GKP AF D DP
Sbjct: 256 KSFVGKGPPKSGQLRSGLIGKSGLIGLSGPIGKPGAFDDDDDDP 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,240,057
Number of Sequences: 37544
Number of extensions: 217991
Number of successful extensions: 498
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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