Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O22
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.38 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   2.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 272  SIRTKRQTCGVCKSSLRT*LPR*CRQSVTDYKSRG 168
            S+R+K     +C++S RT +PR  + S  D   RG
Sbjct: 1322 SMRSKALIDQLCRNSRRTPVPRLAQDSSEDESYRG 1356


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 86  KNGSRDYGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDISVAA 217
           K     Y +  + DKY   +G      CH  C  +L  D + +AA
Sbjct: 454 KKNPNVYKVETVGDKYMAVSGLPEPCRCHARCIARLALDMMDLAA 498


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 86  KNGSRDYGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDISVAA 217
           K     Y +  + DKY   +G      CH  C  +L  D + +AA
Sbjct: 454 KKNPNVYKVETVGDKYMAVSGLPEPCRCHARCIARLALDMMDLAA 498


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 440 DDFRFLNISIMHNI 399
           +D+R L++  +HNI
Sbjct: 74  EDYRILDVDWLHNI 87


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 385 KMFIRILCIILMFKKRKSSR 444
           K+F++ L  ILM ++ K +R
Sbjct: 336 KIFLKYLPTILMMRRPKKTR 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,402
Number of Sequences: 438
Number of extensions: 2545
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)