Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O19
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    30   0.13 
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   1.6  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    26   2.2  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    26   2.8  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    26   2.8  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    25   3.8  
SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz...    25   6.6  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    24   8.7  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 146 GIVTSCPCFTTITFSGFCS*SVHRSTSRSLKRCFWGLPTPLSTSQVY 6
           G +T   C+   T+S FC   V++ T  + K CF G    +++S +Y
Sbjct: 460 GTITGVVCWLASTYS-FCDGIVNKDTVMTSKACFVGNIVSMASSPLY 505


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 220 PCHRLEASRYGSRRPWALADRSPCTES*HPVRVSQRSPFQASARSQCT 77
           P   L+ + YG RRP  L+  SP +   +   +S    F   +  Q +
Sbjct: 27  PVSSLDTNNYGQRRPSLLSGTSPTSSFFNSSMISSNYTFPHGSNKQAS 74


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 284 AAELLTSTEIHTSRPFYKLTKEVNMND 364
           A +L+T++E+H S   Y+ + + NM++
Sbjct: 388 AVDLITTSEVHVSMALYEESDDGNMHE 414


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 214 GRATVSDSGLVIKGVQKGDTGYYGCRAT-NEHGDTYFETLLQ 336
           G AT S +GLV   V      Y G       HGD+Y+E LL+
Sbjct: 230 GDATWSHTGLVPITVNLITGAYVGRNIRLGSHGDSYYEYLLK 271


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 76  RCTDYEQKPEKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVSDSGL 243
           RC   ++  EKV   KHG D  +  KV  +   K      +K   G +    DS L
Sbjct: 97  RCIARKRLTEKVDEFKHGNDSLLARKVQRIVKKKKQREKKSKRKYGNKIDDQDSSL 152


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 218 GLRSVTAVWSSKAYKRVTRDTTAAELLTSTEIHTSRPFYKLTK-EVNMNDTVKIP 379
           G R+  A W   A    T D  A  +   TE +  + F K+T+ E+N    V  P
Sbjct: 453 GARTTGAGWGGSAVHLTTHDKLAKLVEALTEQYYKKQFPKITQSELNAAVVVSKP 507


>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 72  YEQKPEKVLLGFADSIVDF 16
           Y   PEKV +  A S+VDF
Sbjct: 52  YSVTPEKVAVAIAKSVVDF 70


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 430 KLLQFFIDTHNCHLSLLRYFDSV 362
           +++ +++D    H SLLRY  ++
Sbjct: 198 QIMVYYVDCKRAHRSLLRYIQAI 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,609
Number of Sequences: 5004
Number of extensions: 33255
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)