Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O19
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657...    30   0.70 
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    29   2.1  
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521...    28   3.7  
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331...    27   4.9  
12_02_0298 + 17041206-17041712                                         27   6.5  
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008     27   6.5  
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581...    27   8.6  

>07_03_1482 -
           26864793-26865043,26865325-26865454,26865564-26865771,
           26867529-26867599,26867875-26867884,26869562-26870310
          Length = 472

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +1

Query: 85  DYEQKPEKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNA--KPLSGGRATVSDSGLVIKGV 258
           D+  + E V+VV  GQDV   CK  G     ++ S N+  K + G    +S  G     +
Sbjct: 374 DFAGECEAVVVVAKGQDVQGTCKY-GTRVDYILASPNSPYKFVPGSYTVISSKGTSDHHI 432

Query: 259 QKGDTGYYGCRATNEHGDTYFETLLQVN 342
            K D      + T+E      + ++++N
Sbjct: 433 VKVDVTIQDKKETDEESGNQRQRVVKIN 460


>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
            6627009-6627116,6627194-6627328,6627429-6627528,
            6627763-6627974,6628060-6628125,6628231-6628464,
            6628583-6628641,6628716-6628782,6628863-6629192,
            6629267-6629335,6629417-6629503,6629605-6629692,
            6630057-6630178,6630251-6630355,6630442-6630485,
            6630558-6630627,6630711-6630814,6630980-6631189,
            6632935-6633018,6633291-6634003,6634115-6634649,
            6634703-6634789,6634826-6634970,6635049-6635125,
            6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 166  PAPKVVWSHNAKPLSGGRATVSDSGLVIKGVQKGDTG 276
            PAPK V S  A   SG   + SDSG   +G    D G
Sbjct: 1206 PAPKAVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRG 1242


>03_02_0039 -
           5213699-5214775,5214815-5215093,5215300-5215776,
           5216073-5216438
          Length = 732

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 106 KVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVS 231
           + +VVKHG+ VT P +        +   H  +PLSG  A V+
Sbjct: 265 QAVVVKHGEAVTPPSRQDA--TKNITDVHKHQPLSGEHAIVA 304


>05_01_0421 +
           3308692-3309070,3309199-3309339,3309776-3309897,
           3310369-3310632,3310719-3310849,3311254-3311461,
           3311564-3311632,3311722-3311799,3312448-3312621
          Length = 521

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 173 PRSS-GAITRSL*AVAGLRSVTAVWSSKAYKRVTRDTTAAELLTSTEIHT 319
           PRSS G +TRS   V  L     V SSK  +R+  ++ AA   TST   T
Sbjct: 42  PRSSSGRLTRSRAKV--LEESAGVSSSKKKRRIEEESPAATTTTSTTATT 89


>12_02_0298 + 17041206-17041712
          Length = 168

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 172 PKVVWSHNAKPLSGGRATVSDSGLVIKGVQKG 267
           P   WS + KP   G A+    G++++  ++G
Sbjct: 135 PNSAWSKSGKPTEAGGASARKGGVLVRKEERG 166


>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
          Length = 749

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 233 TAVWSSKAYKRVTRDTTAA 289
           +A W+ K YK +T D TAA
Sbjct: 614 SAAWTEKRYKELTADVTAA 632


>01_01_0753 -
           5814087-5814344,5814461-5814646,5814847-5815004,
           5815082-5815214,5815299-5815489,5815826-5816281,
           5816543-5816661,5816729-5816872,5816994-5817065,
           5817368-5817500,5817598-5817733
          Length = 661

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 211 RLEASRYGSRRPWALADRSPC 149
           R+EA  +G+ R W  AD +PC
Sbjct: 55  RVEADPHGALRDWDPADATPC 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,803,682
Number of Sequences: 37544
Number of extensions: 243127
Number of successful extensions: 664
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)