Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_O18
(467 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 31 0.12
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 29 0.47
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 29 0.47
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 27 1.9
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 4.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 4.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 5.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 5.8
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 7.6
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 7.6
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 30.7 bits (66), Expect = 0.12
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 372 AASAFLLDQSNLPPKFEVSP--AGPKTLVPYACPSNLPRSSLKNCRAYPALPNNPSSFCP 199
A+S + +P KF ++P A + P + +S+ + ++ A+P P +F P
Sbjct: 132 ASSDSFPNSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVP 191
Query: 198 SVPNTFPLP 172
V N PLP
Sbjct: 192 PVNNASPLP 200
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 28.7 bits (61), Expect = 0.47
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = -3
Query: 432 TPAPLADRFGLPPICLLISRAASA--FLLDQSNLPP-KFEVSPAGPKTLVPYACPSNLPR 262
T +PL D PP+ ++ ++ S LLD ++ F SP A S+
Sbjct: 179 TSSPLKDFQSSPPLSTVLQKSHSLHDILLDTNDDDHFPFTQSPLTKTKSFNDALTSS--S 236
Query: 261 SSLKNCRAYPALP-NNPSSFCPSVPNTFP 178
S LK C A P +N S PS PN FP
Sbjct: 237 SILKPCMPSIASPTSNRLSHAPSTPNLFP 265
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 28.7 bits (61), Expect = 0.47
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 80 MPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKV 187
+PPS+ +YP Y FS AR R V K+I G++
Sbjct: 667 VPPSHNGQYPGLYLFSNPARMVRPV---KHISTGEL 699
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -3
Query: 351 DQSNLPPKFEVSPAGPKTLVPYACPSNLPRSSLKNCRA-YPALPNNPSSFCPSVPNTF 181
+++N+PP P GP + P+ K R+ +P P+N P + F
Sbjct: 207 NRTNIPPGARYDPTGPGDFRGFGRDERKPQFPFKGPRSQFPGEPDNDDFMPPGSSDMF 264
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 302 LGPAGDTSNFGGRLDWSNKNADAALDISKQIGGRPNLSASGA 427
L P G S FGGR+ + + A +S + N+++S A
Sbjct: 427 LNPTGRPSRFGGRVRGNPLTMNKAGSVSDLLSTSTNMASSDA 468
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 235 SSFTE*SIVILSECTEYFSVAY 170
S FTE S + SEC YF+ +
Sbjct: 1273 SDFTEDSFTLTSECLRYFNYGH 1294
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 5.8
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -3
Query: 321 VSPAGPKTLVPYACPSNLPRSSLKNCRAYPALPNNP-SSFCPSVPNTFP 178
V P P + PS+ P + PA+PN P S PSV P
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPP 1506
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 318 SPAGPKTLVPYACPSNLPRSSLKNCRAYPALPNNPSS 208
SP K L P +N + +L + A+ A+P PS+
Sbjct: 589 SPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPSA 625
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -3
Query: 234 PALPNNPSS-FCPSVPNTFP 178
P +P +PSS F P P TFP
Sbjct: 308 PNIPVSPSSSFVPMYPTTFP 327
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 24.6 bits (51), Expect = 7.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 354 LDQSNLPPKFEVSPAGPKTLVP 289
LD S L PKFEV+P L P
Sbjct: 282 LDDSYLSPKFEVAPGQIVELSP 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,522
Number of Sequences: 5004
Number of extensions: 45664
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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