Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O18
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    29   1.7  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.      28   2.9  
U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical ...    27   5.1  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    27   6.7  
Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical p...    27   8.9  
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...    27   8.9  
DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like...    27   8.9  
AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity ...    27   8.9  

>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 71  QVSMPPSYKERYPEYY-KFSKQARHPRDVTWDK 166
           +V +PP+  ER  +Y  KFS   RHP    W K
Sbjct: 4   EVEVPPTTYERLQQYKEKFSDALRHPDSPDWYK 36


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
 Frame = -3

Query: 432  TPAPLADRFGLPPICLLISRAASAFLLDQSNLPPKFEVSPAGPK---TLVPYACPSNLP- 265
            +P P + RF  PP+  + S  +S F    +  P   +  PA P     L P      LP 
Sbjct: 1416 SPPPSSSRFSTPPVSPVSSCPSSRFSSPSATRPQSPDPVPAAPAENCDLPPPPPEPPLPG 1475

Query: 264  --RSSLKNCRAYPALPNNPSSFCPSVPNTFPLPMF 166
                S K+  +   LP  P    P +  ++  P+F
Sbjct: 1476 EDTPSRKSSSSSAPLPEAPIVVEPPIITSYANPIF 1510


>Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical
           protein K05C4.6 protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 307 TQNPGAVCLPFQLTAIV--IEKLPRVSSFTE*SIVILSECTEYFSVA 173
           T+N   VC    + A+V  I +LP V   TE ++  L  CT   S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408


>AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 307 TQNPGAVCLPFQLTAIV--IEKLPRVSSFTE*SIVILSECTEYFSVA 173
           T+N   VC    + A+V  I +LP V   TE ++  L  CT   S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408


>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical
           protein C01B10.6b protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = -3

Query: 309 GPKTLVPYA-CPSNLPRSSLKNCRAYPALPNNPSSFCPSVPNTFPLPM 169
           G   L PY  C  N+      +C   P   + P   CP    T P P+
Sbjct: 364 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 411


>U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical
           protein C01B10.6a protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = -3

Query: 309 GPKTLVPYA-CPSNLPRSSLKNCRAYPALPNNPSSFCPSVPNTFPLPM 169
           G   L PY  C  N+      +C   P   + P   CP    T P P+
Sbjct: 367 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 414


>AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical
           protein W02F12.3 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -3

Query: 393 ICLLISRAASAFLLDQSNLPPKFEVSPAGPKTLVPYA---CPSNLPRSSLKNCRAYPALP 223
           IC L      +   + +N+P    V+P   +T  P A    P   P SS++   + P LP
Sbjct: 99  ICPLCGSNRVSNTEENTNVPVTGNVTPRDVQTDQPVADLQSPPLSPSSSVEQSGSLPPLP 158

Query: 222 NNPSS 208
            +P+S
Sbjct: 159 ESPAS 163


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 447  LSKFHTPAPLADRFGLPPICLLISRAASAFLLDQSNLPPK-FEVSP 313
            LS +  P PL    GLPP+         A+L   S+LPP+   VSP
Sbjct: 1992 LSDYPVPPPLGSLVGLPPM--------PAYLSSNSSLPPQHHHVSP 2029


>Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical
           protein K07A1.8 protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 374 LDISKQIGGRPNLSASGAGVW 436
           +DI+ +IGG+  + A G G+W
Sbjct: 89  VDIALKIGGQGRVGADGLGIW 109


>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical protein
            M02E1.1a protein.
          Length = 1077

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 237  YPALPNNPSSFCPSVPNTFPL 175
            +P+  NNP   CPS+  +FP+
Sbjct: 1042 FPSFSNNPMPACPSMIPSFPV 1062


>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 186 YSVHSDKMTMDYSVKLDTRGSFSMTIAVSWKGKHTAPGFW 305
           Y+ H+D    + ++     GS S   AV++K K   PG+W
Sbjct: 596 YNSHTDDRDQNATIT----GSLSSQPAVTYKQKSVKPGYW 631


>DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like
           protein protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 374 LDISKQIGGRPNLSASGAGVW 436
           +DI+ +IGG+  + A G G+W
Sbjct: 89  VDIALKIGGQGRVGADGLGIW 109


>AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity
           peptide transporter protein.
          Length = 796

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 186 YSVHSDKMTMDYSVKLDTRGSFSMTIAVSWKGKHTAPGFW 305
           Y+ H+D    + ++     GS S   AV++K K   PG+W
Sbjct: 557 YNSHTDDRDQNATIT----GSLSSQPAVTYKQKSVKPGYW 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,934,056
Number of Sequences: 27780
Number of extensions: 267805
Number of successful extensions: 931
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)