Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O17
         (205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    23   5.5  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    22   9.7  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    22   9.7  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    22   9.7  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 164 LNFRYILERALIFLIKMKNK*YKNVKLRIRSNK 66
           +N+ ++LER  +++  + N  YK +   I   K
Sbjct: 531 VNYGHVLERQNVYIEDLSNPSYKRLAREIHIEK 563


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -1

Query: 106 NSIKMLNYEYVQINKNYILC 47
           + I++LN +YV +++ ++ C
Sbjct: 120 DDIQLLNLDYVDLSEYFVSC 139


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +2

Query: 11  RVXXXXXLIHTHT*YVILIYLNVFVI 88
           R+     + +T   +++ I+LN+F+I
Sbjct: 397 RITLSTFISYTWIPFLLFIFLNIFII 422


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 53  YVILIYLNVFVI*HFYTIYFSF*LRKSMPVL 145
           Y +  YLN     HFY ++ +F   K+ PV+
Sbjct: 91  YELFTYLN-----HFYDVFATFCTVKTCPVM 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,448
Number of Sequences: 5004
Number of extensions: 6461
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)