Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O16
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    27   1.8  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   3.1  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   4.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   4.1  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   4.1  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   5.4  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    25   7.2  
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    24   9.5  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 308 LFSAYIFMRNLSSISLSYTLLCSILKVFHSSFTRSKKETAPTVATTRTSN 159
           L S   F + +SS S         L +FH + + S KET P V+ + +S+
Sbjct: 149 LLSTDAFSQFISSFSPPEKPSMKDLALFHGNKSPSSKETIPKVSNSNSSD 198


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
            SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 219  RVEHFQDGAQQSVRQRNGGQVPHEDIR*EQTQHCEAQPALPAGARLVPPQAEQVRRHVAP 398
            R  ++    ++  RQ N   V    I+ E  + CE+QP +P     +   AEQ   H+ P
Sbjct: 909  RRANYSTRLEEYQRQINSYNVRVAQIKSEHQRRCESQP-IPEDEAKLKLLAEQEDEHLHP 967


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -3

Query: 326 CFAMLCLFSAYIFMRNLSSISLSYTLLCSILKVFHSSFTRSKKETAPT--VATTRTSNNR 153
           C  +L  +++Y F        +   L C I    ++ F  S K    T  V       + 
Sbjct: 269 CIILLMAYTSYFFSNGCHMSGVVSLLFCGITLKHYAFFNMSYKAKLSTKYVFRVLAQLSE 328

Query: 152 HFIFTIFLGV 123
           +FIF I+LG+
Sbjct: 329 NFIF-IYLGM 337


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 259 DNEMEDKFRMKIYAENKHNIAKHNQRY 339
           D+ +++K R+  + ++ HNIAKH   Y
Sbjct: 168 DSRIQEKIRL--FIQSAHNIAKHPSLY 192


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 263 LSYTLLCSILKVFHSSFTRSKKETAPTVATTRTSNNRHFIF 141
           +S T    I+ V+HSS+  S   ++PTV  +   N+   ++
Sbjct: 486 ISSTAYFLIMFVYHSSWVTSNAYSSPTVVLSTVLNDGSLMY 526


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 305 FSAYIFMRNLSSISLSYTLLCSILKVFHSSFTRSKKETAPTVATTRTSNNRHF 147
           F+A +++ +L     +YT L  I    +S+   +   T  +  ++ +SNN  F
Sbjct: 209 FNAKLYLESLREKRRTYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERF 261


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 424 SRSSPARTRGATCLRTCSA*GGTRRAPAGSAGC 326
           S+S+P  T    C  + +  G  ++ PA  AGC
Sbjct: 77  SQSTPGETSSPVCPVSGAHGGADKKCPALEAGC 109


>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 196 SFFDLVKEEWNTFKMEHSKVYDNEMEDKFRMKIYAENK 309
           S   + KEE N   +E S+     +E++ R +   ENK
Sbjct: 102 SLCSVAKEETNAILIEQSQRETQAIEERHRKEAEQENK 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,190
Number of Sequences: 5004
Number of extensions: 28680
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)