Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O15
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547           29   0.95 
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740...    27   3.8  
03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829,349...    27   5.1  
02_01_0120 + 884467-887649                                             27   6.7  
02_02_0632 - 12413660-12413677,12413839-12413870,12414377-124144...    26   8.9  

>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
          Length = 388

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -3

Query: 237 RTFGTLQKHCGTSHSPDGGSISWTVGLSHDGSACCGQYNTECSPAGHFLIG 85
           ++F +L K CG  HSP  G ++  +  +   +A          P G F  G
Sbjct: 143 KSFASLPKDCGGGHSPRPGELAKAMSCAAAATATASAAGGMSVPCGVFFYG 193


>04_04_1060 -
           30473509-30473619,30473815-30473850,30474063-30474095,
           30474246-30474335,30474466-30475215
          Length = 339

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +3

Query: 93  ENARLVNTQCCTAHNKQSRHVTTLPSMRWTHHQGCATYRSA-----SATYRTFETLKPES 257
           ++AR   T CCT H   S+H+      + TH    A   ++     S  +R   T  P+ 
Sbjct: 27  DSARHKATNCCTRHGCSSKHLA--GKDKQTHRAATAAKEASETPRRSQIFRKPSTRTPQG 84

Query: 258 ASNCQNVKYN 287
           ++   N+  N
Sbjct: 85  STATDNISRN 94


>03_01_0456 -
           3495537-3496205,3496304-3496364,3496447-3496829,
           3496924-3497613
          Length = 600

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 243 RFRTFGTLQKHCGTSHSPDGGSISWTVGLSHDGSA 139
           RF ++G +    G     DGGS+S T+GL H  +A
Sbjct: 525 RFVSYGDMAD-LGGGGGYDGGSVSLTLGLQHCNNA 558


>02_01_0120 + 884467-887649
          Length = 1060

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
 Frame = -3

Query: 228 GTLQKHCGTSHSPDGGSISWTVGLSH-------DGSACCGQYNTECSPAGHFLIGIP*P 73
           G L    G S   DGG   W  G+ +       DG  CC      C  AG  ++G+  P
Sbjct: 33  GDLAALRGFSAGLDGGVDGWPAGVGNASSSSTSDGGDCCAWRGVACDEAGE-VVGVVLP 90


>02_02_0632 -
           12413660-12413677,12413839-12413870,12414377-12414494,
           12414794-12414860,12416098-12416237,12416378-12416470,
           12416581-12416643,12418070-12418120,12419508-12419606,
           12419876-12420012,12420121-12420219,12420346-12420523
          Length = 364

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 52  GYGSHHLRSRNSYKKMPGW 108
           G G H  RSR   +K+PGW
Sbjct: 80  GRGDHGHRSRQWSRKLPGW 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,735,801
Number of Sequences: 37544
Number of extensions: 203136
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)