Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O14
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    26   1.4  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    25   2.5  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   3.3  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   3.3  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    23   7.7  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    23   7.7  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 171 ITK*FKAY*RTKFISQKKFLSKTNRYYCTLDGVDRRSRTK 52
           ITK  K   +TK    ++ +  +N+YY   D V + + TK
Sbjct: 50  ITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFKEAGTK 89


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 103 KPLLLY-VRWRRPPKPNQN 50
           KP  +Y V+W +PPK N N
Sbjct: 230 KPSKIYDVQWLKPPKSNSN 248


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 124 KKILVQNKPLLLYVRWRR 71
           KKIL  N PL+  + WRR
Sbjct: 773 KKILKTNDPLIFSMGWRR 790


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 132 ISQKKFLSKTN--RYYCTLDGVDRRSRTKTGNLEGCPPSRFLSGLK 1
           I  +KF+SK       CTLD  D  S      +  C PS F S ++
Sbjct: 794 IHYEKFVSKVTIENDKCTLDCKDNSSYEVDQVVIACSPSHFSSNIE 839


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 45  CQFWFGFGGR 74
           C FWFG+ GR
Sbjct: 412 CLFWFGWSGR 421


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 138 KFISQKKFLSKTNRYYCTLDGVDRRSRTKTGNLEG 34
           K I ++ F SKTNR   ++  +   +  K+ +LEG
Sbjct: 45  KAILKRLFQSKTNRPPISISKIAALTSRKSASLEG 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,392
Number of Sequences: 5004
Number of extensions: 26195
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)