Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O14
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0197 + 7689403-7691070                                           29   0.55 
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    26   5.1  
08_01_0634 - 5511393-5511858,5512581-5512879                           26   6.7  
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367...    26   6.7  
06_03_0821 - 25003001-25003336,25004248-25004376,25004984-250050...    26   6.7  
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753...    26   6.7  

>02_02_0197 + 7689403-7691070
          Length = 555

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 24  KGGNLLNCQFWFGFGGRRHLTYSSSGLFWTRIFFEK*TLFFNK 152
           + G L N Q++  +GG ++++Y    L W R   E  T + +K
Sbjct: 448 RSGYLYNLQYFVKWGGDKNVSYEDDHLSWVRGLHELMTPYVSK 490


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 42  NCQFWFGFGGRRHLTYSSSGLF 107
           NCQ  FGF  ++H  Y+   +F
Sbjct: 561 NCQLTFGFTRKKHNCYNCGSMF 582


>08_01_0634 - 5511393-5511858,5512581-5512879
          Length = 254

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 87  TLDGVDRRSRTKTGNLEGCP 28
           TL+GV  RSR  T  ++GCP
Sbjct: 180 TLEGVRVRSRELTAIVDGCP 199


>06_03_1325 -
           29334401-29334859,29335163-29335857,29336538-29336750,
           29338791-29339472,29339781-29340020
          Length = 762

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 55  GSASAVDAI*RTVVAVCFGQEFFLRNELCS 144
           G  ++VD I    ++ CFG    +RN  CS
Sbjct: 152 GEEASVDPILNVCMSTCFGNGSNIRNGYCS 181


>06_03_0821 -
           25003001-25003336,25004248-25004376,25004984-25005040,
           25005435-25005539
          Length = 208

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 93  YCTLDGVDRRSRTKTGNLEGCPPSR 19
           +C L G++ R+      LEG PPSR
Sbjct: 45  FCKLCGLELRAGLPLSFLEGLPPSR 69


>05_03_0030 +
           7529814-7530257,7530409-7530462,7531605-7532793,
           7532861-7533522
          Length = 782

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 97  LLLYVRWRRPPKPNQNWQFRRLPP 26
           L+ ++ WR+   P ++W+ +  PP
Sbjct: 454 LVAFLGWRKKAGPQEDWEMKCRPP 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,018,261
Number of Sequences: 37544
Number of extensions: 142607
Number of successful extensions: 278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)