Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O14
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125970-1|AAD14763.1|  357|Caenorhabditis elegans Hypothetical ...    27   2.6  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   4.5  
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    25   7.9  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    25   7.9  
AL032655-5|CAA21723.1|  360|Caenorhabditis elegans Hypothetical ...    25   7.9  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      25   7.9  

>AF125970-1|AAD14763.1|  357|Caenorhabditis elegans Hypothetical
           protein Y60C6A.1 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 105 FWTRIFFEK*TLFFNKP*ITW*LITY*EIIFLYAKNNVIYIYLLRHVSLFIPSFYWL 275
           F  RIFF+K +L  NKP     L+ +    +L     +IY +      +FIPS   L
Sbjct: 219 FCPRIFFKKVSLKTNKPGALLPLV-FTVFFYLKCTEIIIYYHFNMLCKIFIPSLLLL 274


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 99   RYYCTLDGVDRRSRTKTGNLEGCP 28
            R YC   G   R+RT T + +GCP
Sbjct: 1019 RDYCGSCGNQTRTRTCTSDADGCP 1042


>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform b protein.
          Length = 1273

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 88  YVRWRRPPKPNQN 50
           Y++WR PP+ N N
Sbjct: 685 YIKWRGPPRTNDN 697


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform a protein.
          Length = 1269

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 88  YVRWRRPPKPNQN 50
           Y++WR PP+ N N
Sbjct: 685 YIKWRGPPRTNDN 697


>AL032655-5|CAA21723.1|  360|Caenorhabditis elegans Hypothetical
           protein Y6B3B.10 protein.
          Length = 360

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 106 NKPLLLYVRWRRPPKPNQNWQ 44
           N PL +++ W    +P  +WQ
Sbjct: 135 NDPLSMWIEWESGGRPKMHWQ 155


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 88  YVRWRRPPKPNQN 50
           Y++WR PP+ N N
Sbjct: 685 YIKWRGPPRTNDN 697


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,203,878
Number of Sequences: 27780
Number of extensions: 138706
Number of successful extensions: 304
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)