Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O13
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    28   2.4  
01_05_0441 + 22213759-22213955,22214778-22214873,22215316-22215340     28   2.4  
06_03_1448 + 30235336-30236763                                         27   4.2  
06_03_1443 + 30182018-30183445                                         27   4.2  
06_03_1440 + 30166515-30167942                                         27   4.2  
06_03_1437 + 30151030-30152457                                         27   4.2  
06_03_1429 + 30100834-30102261                                         27   4.2  
06_03_1425 + 30084383-30085810                                         27   4.2  
06_03_1420 - 30053713-30055140                                         27   4.2  
09_02_0226 - 6007656-6008063,6012166-6012678                           27   5.6  

>03_03_0246 +
           15789635-15794227,15794314-15794555,15794630-15794771,
           15796089-15796272,15796349-15796696,15796753-15797450,
           15798208-15798900
          Length = 2299

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -2

Query: 273 RLLRRQCSSKPAVEDERASAQCVVRRIPDERER 175
           R+LR Q   +  V +E+A A+ +VR+  +ERER
Sbjct: 475 RILRLQEQERQRVLEEQARAREIVRKQEEERER 507


>01_05_0441 + 22213759-22213955,22214778-22214873,22215316-22215340
          Length = 105

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -3

Query: 260 DNVALSRRLKTNELVPSVWSGEYQTSERDR---LAFAPSDLVCIDIFCMMYLTY 108
           + + L R  +  EL  S+ SGE    +R R    A +P DL  ++ F M+ +TY
Sbjct: 6   EQLLLQRSEQLRELYSSLLSGECADQQRRRRPVTALSPEDLGNMEWFYMVCMTY 59


>06_03_1448 + 30235336-30236763
          Length = 475

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 300 IWRLFSVSIRLLRRQCSSKPAVEDERASAQCVVRR---IPDERERQ 172
           +W  F+ ++RL R  CSS     +E +  + V  R   IPD  +RQ
Sbjct: 154 VWSEFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIPDSAKRQ 199


>06_03_1443 + 30182018-30183445
          Length = 475

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 300 IWRLFSVSIRLLRRQCSSKPAVEDERASAQCVVRR---IPDERERQ 172
           +W  F+ ++RL R  CSS     +E +  + V  R   IPD  +RQ
Sbjct: 154 VWSEFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIPDSAKRQ 199


>06_03_1440 + 30166515-30167942
          Length = 475

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 300 IWRLFSVSIRLLRRQCSSKPAVEDERASAQCVVRR---IPDERERQ 172
           +W  F+ ++RL R  CSS     +E +  + V  R   IPD  +RQ
Sbjct: 154 VWSEFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIPDSAKRQ 199


>06_03_1437 + 30151030-30152457
          Length = 475

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 300 IWRLFSVSIRLLRRQCSSKPAVEDERASAQCVVRR---IPDERERQ 172
           +W  F+ ++RL R  CSS     +E +  + V  R   IPD  +RQ
Sbjct: 154 VWSEFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIPDSAKRQ 199


>06_03_1429 + 30100834-30102261
          Length = 475

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 300 IWRLFSVSIRLLRRQCSSKPAVEDERASAQCVVRR---IPDERERQ 172
           +W  F+ ++RL R  CSS     +E +  + V  R   IPD  +RQ
Sbjct: 154 VWSEFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIPDSAKRQ 199


>06_03_1425 + 30084383-30085810
          Length = 475

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 300 IWRLFSVSIRLLRRQCSSKPAVEDERASAQCVVRR---IPDERERQ 172
           +W  F+ ++RL R  CSS     +E +  + V  R   IPD  +RQ
Sbjct: 154 VWSEFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIPDSAKRQ 199


>06_03_1420 - 30053713-30055140
          Length = 475

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 300 IWRLFSVSIRLLRRQCSSKPAVEDERASAQCVVRR---IPDERERQ 172
           +W  F+ ++RL R  CSS     +E +  + V  R   IPD  +RQ
Sbjct: 154 VWSEFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIPDSAKRQ 199


>09_02_0226 - 6007656-6008063,6012166-6012678
          Length = 306

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 182 ERDRLAFAPSDLVCIDIFCMMYLTYGKF 99
           ER+    A SD +C+D F M  LT GK+
Sbjct: 113 EREEEEEAASDDLCLDYFSMGKLTKGKY 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,087,956
Number of Sequences: 37544
Number of extensions: 167230
Number of successful extensions: 462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)