Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_O11
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 91 7e-20
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 0.92
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 26 2.1
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 25 3.7
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 25 4.9
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 25 6.5
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 24 8.6
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 24 8.6
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 24 8.6
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 91.1 bits (216), Expect = 7e-20
Identities = 44/87 (50%), Positives = 58/87 (66%)
Frame = +1
Query: 166 MINSPSPAQANVDREKIYTWILELCHPNTRENALLELSKKREVVPDSAIMLWHSFGTIAA 345
M N SP N + +Y WI++L +RE AL+ELS+KRE D A++LWHS+G + A
Sbjct: 1 MENLESP---NYEPALVYEWIIQLVSGTSREQALVELSRKREQYEDLALILWHSYGVMTA 57
Query: 346 LLQEITNIYVAMIPPTLTAHQSNRVCN 426
LLQEI ++Y + PPTLT SNRVCN
Sbjct: 58 LLQEIISVYPLLNPPTLTGPTSNRVCN 84
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.5 bits (58), Expect = 0.92
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 211 KIYTWILELCHPNTRENALLELSKKREVVPDSAIMLWHSF-GTIAALLQEITNIYV--AM 381
K ++++L L + + +EL K R +V + IM W + GT +L Q +IY+ M
Sbjct: 643 KTFSYVLHLFQAQSDFESSVEL-KDRSIVTKTTIMSWSKYQGTKESLFQ-FLSIYIPECM 700
Query: 382 IPPT 393
+P T
Sbjct: 701 LPFT 704
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 26.2 bits (55), Expect = 2.1
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = +1
Query: 55 FIEYIYENCVKSIKRSSLISRCRVRILS*RWYFIKFMMINSPSPAQANVDREKIYTWILE 234
FI Y E KSI L I F+ F ++PS A+ D EK+YT ++
Sbjct: 244 FIAYGLEFVTKSIAPWKLFMIITGGITFFLSIFLFFYYPDNPSKARFLTDEEKLYT--ID 301
Query: 235 LCHPNTRENALLELSKKREVV 297
+TR ++ KK + +
Sbjct: 302 RVRKSTRGGIENKIFKKHQFI 322
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 3.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 316 LWHSFGTIAALLQEITNIYVAMIPPTLTAH 405
L+H G + LL + + A++PP +AH
Sbjct: 211 LFHVHGLLCGLLSTLASGGCAVVPPKFSAH 240
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 25.0 bits (52), Expect = 4.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 265 LLELSKK-REVVPDSAIMLWHSFGTIAALLQEITNIYVAMIPPTLT 399
+L++ K +E+VPD IM S +A L E ++ + PT T
Sbjct: 34 ILKVDKATKEIVPDGEIMDLQSIEEVADELSETNPRFILVSYPTKT 79
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 24.6 bits (51), Expect = 6.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 10 YLRDFRFCELFS*FTFIEYIYENCVKSIKRSSLISRCRV 126
YL D F E+ IE++ +C++ I + IS+C V
Sbjct: 40 YLVDCVFLEISELREIIEFVGPDCLRGIYFTEPISQCFV 78
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 24.2 bits (50), Expect = 8.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 215 YIHGSSSYVIQIREKTLFWS*AKNGK*F--QIQQLCSGIVLVLSPHYYK 355
YIH SSS + + +++ K + QI ++ +L +SPHY+K
Sbjct: 991 YIHPSSSVAEKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFK 1039
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 24.2 bits (50), Expect = 8.6
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 167 IINFMKYHRHDKILTLHRDINDERF 93
+++ +K H H KI+ + +N E+F
Sbjct: 774 VLHLLKQHPHLKIIIMSATLNAEKF 798
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 24.2 bits (50), Expect = 8.6
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 226 ILELCHPNTRENALLELSKKREVVPDSAIMLWHSFGTIAALLQE 357
I +CHPN + +LE V LW TI + Q+
Sbjct: 1904 ISRVCHPNNKVYKILEHIIANVVASYPGETLWQLMATIKSTSQK 1947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,871,736
Number of Sequences: 5004
Number of extensions: 39373
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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