Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_O11
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0921 + 22606287-22606490,22607139-22607210,22607433-226075... 101 3e-22
04_04_1133 - 31132835-31132942,31133046-31133115,31133201-311333... 101 3e-22
03_06_0207 - 32356951-32357058,32357187-32357256,32357363-323575... 98 3e-21
02_02_0573 + 11692549-11692659,11693921-11693992,11694251-116943... 82 2e-16
02_02_0541 - 11339269-11339376,11339511-11339580,11339679-113398... 57 7e-09
10_07_0165 + 13740611-13740706,13741159-13741215,13741523-137416... 35 0.032
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042... 27 4.8
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 27 4.8
10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568 27 8.3
>07_03_0921 +
22606287-22606490,22607139-22607210,22607433-22607522,
22607694-22607736,22608151-22608257,22608848-22608943,
22609543-22609733,22609819-22609888,22609992-22610099
Length = 326
Score = 101 bits (241), Expect = 3e-22
Identities = 46/67 (68%), Positives = 54/67 (80%)
Frame = +1
Query: 226 ILELCHPNTRENALLELSKKREVVPDSAIMLWHSFGTIAALLQEITNIYVAMIPPTLTAH 405
+L+LC P RENALLELSKKRE+ D A +LWHSFGT+AALLQEI +IY A+ PPTL+
Sbjct: 50 VLDLCDPELRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPG 109
Query: 406 QSNRVCN 426
SNRVCN
Sbjct: 110 ASNRVCN 116
>04_04_1133 -
31132835-31132942,31133046-31133115,31133201-31133391,
31133991-31134086,31134676-31134782,31135197-31135239,
31135411-31135500,31135723-31135794,31136443-31136646
Length = 326
Score = 101 bits (241), Expect = 3e-22
Identities = 46/67 (68%), Positives = 54/67 (80%)
Frame = +1
Query: 226 ILELCHPNTRENALLELSKKREVVPDSAIMLWHSFGTIAALLQEITNIYVAMIPPTLTAH 405
+L+LC P RENALLELSKKRE+ D A +LWHSFGT+AALLQEI +IY A+ PPTL+
Sbjct: 50 VLDLCDPELRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPG 109
Query: 406 QSNRVCN 426
SNRVCN
Sbjct: 110 ASNRVCN 116
>03_06_0207 -
32356951-32357058,32357187-32357256,32357363-32357553,
32358011-32358106,32359014-32359120,32359470-32359512,
32359806-32359895,32360025-32360096,32362390-32362605
Length = 330
Score = 97.9 bits (233), Expect = 3e-21
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +1
Query: 226 ILELCHPNTRENALLELSKKREVVPDSAIMLWHSFGTIAALLQEITNIYVAMIPPTLTAH 405
+L+LC P RENALL+LSKKRE+ D A +LWHS+GTIAALLQEI +IY ++ PPTL+
Sbjct: 54 VLDLCDPELRENALLDLSKKREIFQDLAPLLWHSYGTIAALLQEIVSIYPSLSPPTLSPG 113
Query: 406 QSNRVCN 426
SNRVCN
Sbjct: 114 ASNRVCN 120
>02_02_0573 +
11692549-11692659,11693921-11693992,11694251-11694340,
11694456-11694498,11694741-11694847,11696834-11696929,
11697359-11697549,11697649-11697718,11697937-11698044
Length = 295
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +1
Query: 202 DREKIYTWILELCHPNTRENALLELSKKREVVPDSAIMLWHSFGTIAALLQEITNIYVAM 381
D E +L+L P+ R +AL EL KKRE+ PD A +LWHSFGTI LLQEI +Y +
Sbjct: 11 DPELAQRLVLDLLDPDLRGHALAELRKKREMFPDLAPLLWHSFGTIIVLLQEIIVVYPVL 70
Query: 382 IPPTLTAHQSNRVCN 426
PPTL+ S+RVCN
Sbjct: 71 SPPTLSLLASSRVCN 85
>02_02_0541 -
11339269-11339376,11339511-11339580,11339679-11339869,
11341063-11341158,11342444-11342550,11343468-11343510,
11343591-11343680,11343943-11344005
Length = 255
Score = 56.8 bits (131), Expect = 7e-09
Identities = 24/40 (60%), Positives = 32/40 (80%)
Frame = +1
Query: 307 AIMLWHSFGTIAALLQEITNIYVAMIPPTLTAHQSNRVCN 426
A++LW+SFG +A+LLQEI +Y A+ PPTL+ SNRVCN
Sbjct: 6 ALLLWNSFGIVASLLQEIIVVYPALSPPTLSLGASNRVCN 45
>10_07_0165 +
13740611-13740706,13741159-13741215,13741523-13741681,
13742315-13742398,13742496-13742567,13742810-13742881,
13743085-13743125,13743296-13743362,13744033-13744224,
13744314-13744403,13744742-13744849,13745089-13745154
Length = 367
Score = 34.7 bits (76), Expect = 0.032
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2
Query: 143 RHDKILTLHRDINDERFIDLTQFS*IYSINVNYENSSQNRKSRKY 9
R I +H D+N+ R+I + +F IY +NV S N K RKY
Sbjct: 54 RFSSIAHIHIDVNESRYICVPRFINIY-MNVGNARKSYNMKRRKY 97
>12_02_0828 -
23502276-23503472,23503568-23504002,23504097-23504213,
23505330-23505396,23505685-23505725,23506161-23506237,
23506699-23506945
Length = 726
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 172 NSPSPAQANVDREKIYTWILELCHPNTRE 258
N P+PA ++ +R I + +LC P+T E
Sbjct: 387 NKPTPACSSSERANIDALLSKLCSPDTEE 415
>08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -3
Query: 304 NLELLPVFCLTPEERFLAYLDDIARGSMYIFFPYPHWPVLD 182
NL L FC+TP +RFL Y ++ G++ P P+ P LD
Sbjct: 1031 NLMRLHGFCITPTKRFLVY-PYMSNGTVASQRP-PYEPPLD 1069
>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
Length = 156
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 244 PNTRENALLELSKK--REVVPDSAIMLWHSFGT 336
P T + ALLE ++ ++ PD +++ W+S GT
Sbjct: 99 PATFDRALLEKDQEIYKKAFPDLSVLGWYSIGT 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,203,099
Number of Sequences: 37544
Number of extensions: 225075
Number of successful extensions: 454
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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