Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O11
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical p...   104   2e-23
Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AC006723-1|AAF59429.3|  534|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z47067-2|CAA87329.1|  498|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha...    27   7.4  
AF040657-4|AAB95053.1|  261|Caenorhabditis elegans Hypothetical ...    26   9.8  

>U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical
           protein C26E6.3 protein.
          Length = 321

 Score =  104 bits (250), Expect = 2e-23
 Identities = 49/83 (59%), Positives = 62/83 (74%)
 Frame = +1

Query: 178 PSPAQANVDREKIYTWILELCHPNTRENALLELSKKREVVPDSAIMLWHSFGTIAALLQE 357
           PS A  +++ ++I  WI++L  P  RE ALLELSKKR+ VPD  I LWHSFGT++ALLQE
Sbjct: 18  PSSANLDINTDEIMQWIIDLRDPPKREAALLELSKKRDSVPDLPIWLWHSFGTMSALLQE 77

Query: 358 ITNIYVAMIPPTLTAHQSNRVCN 426
           +  IY A++P  LTA QSNRVCN
Sbjct: 78  VVAIYPAIMPANLTAAQSNRVCN 100


>Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical
           protein F44E5.2 protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 196 NVDREKIYTWILELCHPNTRENALLELSKKREVVPDSAIMLWHSFGTIAALLQEITNI 369
           NVD+E I T  ++  HPN ++ A L    K  +VP+  I+     G+    L+  T +
Sbjct: 260 NVDKESIST--IQNSHPNLKKVAALCEPGKNFIVPEIKILNSIDLGSTLKCLEHYTTL 315


>AC006723-1|AAF59429.3|  534|Caenorhabditis elegans Hypothetical
           protein Y19D10B.2 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -2

Query: 398 VNVGGIIATYMFVISCNNAAIVPKLCQSIIAESGTTSRFLLNSRRAFSRVFG 243
           VNV GI   Y    +  N    P++C  I  +    S   ++S +    +FG
Sbjct: 444 VNVDGIYGKYCTPTTSENLCTFPEICPKIFGDVEVGSSSSIDSLKFMEIIFG 495


>Z47067-2|CAA87329.1|  498|Caenorhabditis elegans Hypothetical
           protein C43C3.2 protein.
          Length = 498

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 178 PSPAQANVDREKIYTWI 228
           P P  ANVD  +IY WI
Sbjct: 473 PMPMSANVDGNEIYNWI 489


>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical protein
            T25G3.2 protein.
          Length = 1322

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 313  MLWHSFGTIAALLQEITNIYVAMIPPTL-TAHQSNRVCN 426
            ML H   T+    QE+ N+Y   + P + T +   R+ N
Sbjct: 1229 MLLHRLNTMIGAFQEVKNLYEYGVSPVINTKNDDERIMN 1267


>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase 1
            protein.
          Length = 1322

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 313  MLWHSFGTIAALLQEITNIYVAMIPPTL-TAHQSNRVCN 426
            ML H   T+    QE+ N+Y   + P + T +   R+ N
Sbjct: 1229 MLLHRLNTMIGAFQEVKNLYEYGVSPVINTKNDDERIMN 1267


>AF040657-4|AAB95053.1|  261|Caenorhabditis elegans Hypothetical
           protein T20H9.4 protein.
          Length = 261

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 49  FTFIEYIYENCVKSIKRSSLISRCRVRIL 135
           F  +E I  NC+   K  +++SRC+ ++L
Sbjct: 111 FIHVESIKLNCITIDKCLAILSRCKTKVL 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,208,869
Number of Sequences: 27780
Number of extensions: 214301
Number of successful extensions: 519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)