Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O10
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0290 + 29016410-29018920                                         31   0.40 
01_03_0204 + 13771346-13772680                                         27   3.7  
07_01_0777 + 6004370-6004559,6005089-6005207,6005411-6005538,600...    27   6.5  

>05_07_0290 + 29016410-29018920
          Length = 836

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 2   VAALLRDRRNIHGDCCSHKVSTLLITQTEYDVERGNA*NKPGVTC 136
           + +LLRD  ++HGD   H+V+  L  Q      R      P VTC
Sbjct: 47  LVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTC 91


>01_03_0204 + 13771346-13772680
          Length = 444

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 165 QCLISNFWACSKAHNYCVI 221
           Q L +  WAC+++HN C+I
Sbjct: 79  QELAARAWACAQSHNRCII 97


>07_01_0777 +
           6004370-6004559,6005089-6005207,6005411-6005538,
           6005645-6005749,6007156-6008650
          Length = 678

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 120 LF*ALPRSTSYSVCVMSNVETLCEQQSPW 34
           LF   PR+TS  + V S+V T+     PW
Sbjct: 177 LFSIRPRTTSIPISVNSDVPTMAGSHIPW 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,267,100
Number of Sequences: 37544
Number of extensions: 112930
Number of successful extensions: 241
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)