Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O10
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical pr...    26   7.8  
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    26   7.8  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    26   7.8  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    26   7.8  

>U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical
           protein C28G1.6 protein.
          Length = 295

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 163 NGVGTKIDLAGNTWFIL--SVASFYIVFCLCDEQCR 62
           +G   KID AG TW      VA F  V   CD +C+
Sbjct: 78  SGKNKKIDTAGPTWCNAHQEVAKFICVNTDCDVKCK 113


>Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical
           protein T02D1.4 protein.
          Length = 446

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 37  WRLLLTQGFYIAHHTNRIRCRTRQRLK*TRCYLLS 141
           W+L+L +  +++H T   RC TR  L  T   L++
Sbjct: 286 WKLVLKRSDFVSHFTAEKRCVTRITLITTGLQLIA 320


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform c protein.
          Length = 1576

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 50  SHKVSTLLITQTEYDVERG 106
           SH V +L++TQT +D+E G
Sbjct: 218 SHAVFSLIVTQTLHDLENG 236


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform b protein.
          Length = 1610

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 50  SHKVSTLLITQTEYDVERG 106
           SH V +L++TQT +D+E G
Sbjct: 218 SHAVFSLIVTQTLHDLENG 236


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform a protein.
          Length = 1595

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 50  SHKVSTLLITQTEYDVERG 106
           SH V +L++TQT +D+E G
Sbjct: 218 SHAVFSLIVTQTLHDLENG 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,486,551
Number of Sequences: 27780
Number of extensions: 105948
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)