Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O09
         (266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    23   5.5  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    23   9.6  
SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...    23   9.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    23   9.6  

>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 43  LSFFFNLIWRRIELAPR 93
           L+ +  +I+ R+ELAPR
Sbjct: 168 LALYLTMIYSRVELAPR 184


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 162 DWERRRRGKSSRVGARVGVHR 100
           DW ++R G+SS   A  G+++
Sbjct: 247 DWRKQRSGRSSSHVASKGINK 267


>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 12/53 (22%), Positives = 21/53 (39%)
 Frame = -1

Query: 206 QQRAALVXXXXXXXXXXXXXXXXRAVESVREWECTGKERGASSIRLQIKLKKN 48
           QQR+ L                  AV+ V +W   G   G ++I+  +  ++N
Sbjct: 88  QQRSLLKLAAEGIHVYSPHTAVDAAVDGVNDWLAQGIAGGRNNIKSVVPTQQN 140


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 28  IVYFDLSFFFNLIWRRIELAPRSLPVHSHSR 120
           I  FD +FF  +IW  + ++  S P     R
Sbjct: 563 IASFDYTFFVRIIWSLLLISFLSKPTFKQLR 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,584
Number of Sequences: 5004
Number of extensions: 7358
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)