Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O09
         (266 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical pr...    27   1.4  
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical
           protein ZK930.1 protein.
          Length = 1354

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  EKKSFILIYHFFLI*SGDESNSPRALC 100
           E KS IL+YHFF I  G++    R LC
Sbjct: 556 ESKSLILLYHFF-IKIGNDDTLLRFLC 581


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 144 RGKSSRVGARVGVHRQRARGEFDSS 70
           RG+ SR G+R G  R R RG +  S
Sbjct: 8   RGRGSRGGSRGGSGRGRGRGGYGDS 32


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
            C18H2.1 protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 165  ADWERRRRGKSS-RVGARVGV-HRQRARGEFDS 73
            ADWERR+R  +  +VG +  +  ++ A G+ +S
Sbjct: 1408 ADWERRKRNMNEMKVGNKESIEQKETAEGDDES 1440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,925,521
Number of Sequences: 27780
Number of extensions: 42229
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)