Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O08
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   1.1  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    26   3.5  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    25   6.1  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   8.1  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 364 VLEFTPTFWRLNSPGQSGFRRVSSRERSGYGLSSQW 471
           VL F   FW LN PG+  F  V   + + Y L  ++
Sbjct: 67  VLSFITRFWNLNLPGEVVFDEVHFGKFASYYLQGKY 102


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 479 KHGHWELSPYPDRSRDETL 423
           +HG+W+L P+P    D  +
Sbjct: 74  RHGYWKLHPHPHHQHDSII 92


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 79  LIQHEFNSKIEKKTIL*THLKVNYTVI 159
           L+QH  NS+ + K  +  ++K NY VI
Sbjct: 118 LVQHRRNSQNKLKCAMEVNIKTNYIVI 144


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 577 PAISEVSCARCQLFKKPFHAPFEEPQIPWYSLGNTAT 467
           PA +E   A C+   K FH P E       S GNT++
Sbjct: 280 PAFTEEILA-CENLLKVFHVPVESSTTNAVSTGNTSS 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,967
Number of Sequences: 5004
Number of extensions: 54556
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)