Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O08
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395...    29   2.7  
04_03_0191 - 12452369-12452499,12452875-12453077,12453641-124538...    29   3.6  
09_04_0153 + 15179064-15179210,15179598-15179668,15179831-151800...    27   8.2  
02_05_0243 - 27124559-27124864,27126922-27126990,27127741-271279...    27   8.2  

>01_06_0459 +
           29538025-29538579,29539190-29539354,29539448-29539585,
           29539685-29539836,29539949-29540057,29540281-29540379,
           29541051-29541116,29541208-29541315,29541428-29541553
          Length = 505

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +1

Query: 466 QWPCFPGNT--REFGVLQKEREKV 531
           Q+PCFP N   RE GV+ +E E+V
Sbjct: 163 QYPCFPANALQRERGVILREMEEV 186


>04_03_0191 -
           12452369-12452499,12452875-12453077,12453641-12453835,
           12454301-12454809
          Length = 345

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 482 GKHGHWELSPYPDRSRDETLLKPDCPGLFSLQN 384
           G+ G W ++P P+R R     +P C   F   N
Sbjct: 146 GQRGRWRVAPEPERPRFRCRCRPRCDYAFGRGN 178


>09_04_0153 +
           15179064-15179210,15179598-15179668,15179831-15180017,
           15180107-15180298
          Length = 198

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -3

Query: 488 FPGKHGHWELSPYPDRSRDETLLKPDCPGLFSLQNVGVNSKTPCRWRAVPW 336
           FPG H H EL        DE ++  D   L + ++ G NS      R+V W
Sbjct: 142 FPGHHNHLELKKAEQAGVDEDIMTADV-NLSACRDTG-NSPASDDKRSVSW 190


>02_05_0243 -
           27124559-27124864,27126922-27126990,27127741-27127926,
           27128572-27129093
          Length = 360

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -2

Query: 561 YHARVANSLKNLFTLLLKNPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSGTI*PPKC 382
           +H+R +++ + LF+  L++    G+PW  R L   S  GS    +  E GL+G     +C
Sbjct: 84  HHSRESSTGRLLFSDQLRSGAAAGVPW--RRLAQGSGAGSVGDDDDDEGGLAGAASQWRC 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,392
Number of Sequences: 37544
Number of extensions: 313862
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)