Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_O08
(583 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 28 4.2
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 28 4.2
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 28 4.2
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 28 5.6
AF025453-7|AAK31401.1| 253|Caenorhabditis elegans Hypothetical ... 28 5.6
AC024859-9|ABQ13045.1| 296|Caenorhabditis elegans Hypothetical ... 27 7.4
AC024859-8|ABQ13046.1| 337|Caenorhabditis elegans Hypothetical ... 27 7.4
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z70684-4|CAA94599.1| 234|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 27 9.7
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 419 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 505
SG P PG D AP + G PGN G
Sbjct: 127 SGAAGPAGSPGQDGAPGNDGAPGAPGNPG 155
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 419 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 505
SG P PG D AP + G PGN G
Sbjct: 127 SGAAGPAGSPGQDGAPGNDGAPGAPGNPG 155
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 419 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 505
SG P PG D AP + G PGN G
Sbjct: 127 SGAAGPAGSPGQDGAPGNDGAPGAPGNPG 155
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 419 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 505
SG P PG D AP + G PGN G
Sbjct: 127 SGAAGPAGSPGQDGAPGNDGAPGAPGNPG 155
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 404 PDSPVSGEFHPVNDPGMD*APSGRVSQGIPGNLG 505
P S G P DPG+D AP S G PG G
Sbjct: 276 PGSSQPGPQGPPGDPGIDGAPGNPGSPGEPGPPG 309
>AF025453-7|AAK31401.1| 253|Caenorhabditis elegans Hypothetical
protein C08F1.6 protein.
Length = 253
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 212 INLCSRNTSPISYKYSVSITV*FTFKCV*SIVFFSIF-ELNSC 87
IN+C SPI Y+ S + TV K + I+F +IF N C
Sbjct: 130 INICREKESPIHYRLSNTTTVTNAQKLI-MILFLAIFGAFNIC 171
>AC024859-9|ABQ13045.1| 296|Caenorhabditis elegans Hypothetical
protein Y71H2AM.14a protein.
Length = 296
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 447 RVWTELPVA-VFPREYQGIWGSSKGA*KGFLKSWQRAH 557
RV P+ V + Y+G+W S+K A G ++ +Q H
Sbjct: 9 RVLNRTPILFVEDKNYEGMWKSTKEAIPGLIEKFQIVH 46
>AC024859-8|ABQ13046.1| 337|Caenorhabditis elegans Hypothetical
protein Y71H2AM.14b protein.
Length = 337
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 447 RVWTELPVA-VFPREYQGIWGSSKGA*KGFLKSWQRAH 557
RV P+ V + Y+G+W S+K A G ++ +Q H
Sbjct: 50 RVLNRTPILFVEDKNYEGMWKSTKEAIPGLIEKFQIVH 87
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 419 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 505
+G P PG D AP + G PGN G
Sbjct: 128 TGAAGPAGSPGQDGAPGNDGAPGAPGNPG 156
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 419 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 505
+G P PG D AP + G PGN G
Sbjct: 124 TGAAGPAGSPGQDGAPGNDGAPGAPGNPG 152
>Z70684-4|CAA94599.1| 234|Caenorhabditis elegans Hypothetical
protein F28D1.4 protein.
Length = 234
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 263 CLRYNCGKEVGRGIKKKINLCSRNTSPISYK 171
C+ YN +E RG++ C R+T+ +K
Sbjct: 173 CVGYNTDEECCRGVRNTPETCDRSTTAQKFK 203
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 422 GEFHPVNDPGMD*APSGRVSQGIPGNLG 505
G P PG D AP + G PGN G
Sbjct: 126 GSAGPAGSPGQDGAPGNDGAPGAPGNPG 153
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,327,180
Number of Sequences: 27780
Number of extensions: 295632
Number of successful extensions: 726
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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