Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O08
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 383 VGVNSKTPCRWRAVPW 336
           +  N+K PC W A PW
Sbjct: 294 IDANTK-PCTWAARPW 308


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 383 VGVNSKTPCRWRAVPW 336
           +  N+K PC W A PW
Sbjct: 294 IDANTK-PCTWAARPW 308


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 383 VGVNSKTPCRWRAVPW 336
           +  N+K PC W A PW
Sbjct: 294 IDANTK-PCTWAARPW 308


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 342 TMVKIKCRH*IINIFTNLYLIV*IDFMFTLQLWER 238
           TM+  + RH  + +F  LY     D  +   +W R
Sbjct: 96  TMMNKEMRHQAVVLFRLLYSAKTFDVFYNTAVWAR 130


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 342 TMVKIKCRH*IINIFTNLYLIV*IDFMFTLQLWER 238
           TM+  + RH  + +F  LY     D  +   +W R
Sbjct: 96  TMMNKEMRHQAVVLFRLLYSAKTFDVFYNTAVWAR 130


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 501 KFPGIPWETRPLGAQSIPGSF 439
           K P +P   RP+   + P SF
Sbjct: 647 KMPSMPLLPRPISCHTTPDSF 667


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 105 NRKKNYTLNTFKGKLY 152
           N K NY  N +  KLY
Sbjct: 101 NNKYNYNNNNYNKKLY 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,141
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)