Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_O07
(268 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 32 0.012
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 28 0.25
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 0.44
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 26 0.78
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 26 0.78
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 1.0
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 1.8
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 25 2.4
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 25 2.4
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 2.4
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 24 3.1
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 24 4.1
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 23 5.5
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 23 7.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 23 7.2
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 23 7.2
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 23 7.2
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 23 7.2
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual 23 7.2
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 23 7.2
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 23 7.2
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 32.3 bits (70), Expect = 0.012
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 110 FEEQQNEMGNIVNESYRDAVNFIEEQRRK--IEDDVSDDTYKIDTKWQ 247
FE+++ E+ V E Y ++F+ R++ +DD +Y+ KWQ
Sbjct: 190 FEDEEEEVEEQVEEEYEPIIDFVLNHRKRADAQDDDPKSSYQYLIKWQ 237
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 27.9 bits (59), Expect = 0.25
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 113 EEQQNEMGNIVN-ESYRDAVNFIEEQRRKIEDDVSDD 220
EE++N++ + N E+ + ++ +E RK++DD DD
Sbjct: 307 EEEENKVSSSSNIEASQSSLEVKDEANRKVDDDDEDD 343
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 27.1 bits (57), Expect = 0.44
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 148 INNVSHFILLLFKERSYCTCLILKEFLER 62
++ ++ ILLLF++ CLI +E LE+
Sbjct: 610 VSTIASVILLLFQDLKENQCLIFEEILEK 638
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 0.78
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 92 SAVRSFFEEQQNEMGNIVNESYRDAVNFIEEQRRKIEDDVSDD 220
+ + F E QN++ E+ + I EQ+ KIEDDV ++
Sbjct: 707 NTILPFSEASQNDVSEDDFENEESDDDKIFEQQTKIEDDVKNE 749
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 26.2 bits (55), Expect = 0.78
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 161 DAVNFIEEQRRKIEDDVSDDTYKIDTKWQ 247
DA+N I + +R ++ ++DD Y+ +Q
Sbjct: 212 DAINMISKDQRFLDAPITDDRYEYQLAYQ 240
>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.8 bits (54), Expect = 1.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 163 ISVTFINNVSHFILLLFKERSYCTC 89
+S+T N+ H + LF++R +C+C
Sbjct: 155 LSITLPNHPFHVPVYLFEKRLHCSC 179
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 1.8
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 71 EFFQDQTSAVRSFFEEQQNEMGNIVNESYRDAVNFIEEQRRKIEDDVSDDTYKIDTKWQV 250
E F++ + ++ MG + N ++EQ K +DDV D KI K Q+
Sbjct: 776 EQFREHAMKEKEKKGKENENMGETTVDHENINSNVMDEQGEKQKDDVVDMVRKITEKAQL 835
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 24.6 bits (51), Expect = 2.4
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +2
Query: 158 RDAVNFIEEQRRKIEDDVSDDTYK 229
++ +NF+ +++I DD+S++T K
Sbjct: 315 QEVLNFLITMKKEIGDDLSEETIK 338
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 24.6 bits (51), Expect = 2.4
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 53 FSWPFQEFFQDQTSA---VRSFFEEQQNEMGNIVNESYRDAVNFIEEQRRKIEDDVSDDT 223
FS + E SA + F+E +E+ ++ ESY+D+ ++ R + SD
Sbjct: 178 FSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237
Query: 224 YKIDTK 241
Y K
Sbjct: 238 YNQSAK 243
Score = 24.2 bits (50), Expect = 3.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 104 SFFEEQQNEMGNIVNESYRDAVNFIEEQRRKIEDDVSD 217
S E+++ GN R A I+E R+KIED++SD
Sbjct: 65 SSIEQKEESRGNT-----RQAA-LIKEYRKKIEDELSD 96
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 24.6 bits (51), Expect = 2.4
Identities = 11/57 (19%), Positives = 28/57 (49%)
Frame = +2
Query: 62 PFQEFFQDQTSAVRSFFEEQQNEMGNIVNESYRDAVNFIEEQRRKIEDDVSDDTYKI 232
PF E F +T +R+F + M +++++ V + ++ + ++DD ++
Sbjct: 496 PFVERFYRETGLIRAFEQRIMTNMNSVLSKVCNTIVTYADDLKSYGLPLIADDYMRL 552
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 3.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 155 YRDAVNFIEEQRRKIEDDVSDDTYK 229
YR N IE++ R+I+D ++D Y+
Sbjct: 32 YRMFPNLIEKRIRRIDDALADGEYE 56
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 4.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 65 FQEFFQDQTSAVRSFFEEQQNEMGNIVNESYRDAVNFIEEQ 187
FQEF Q + V FFE N+V+++ R+ ++ I +Q
Sbjct: 68 FQEFLDQQANKVEEFFE-------NLVSDA-RERMDLISDQ 100
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 23.4 bits (48), Expect = 5.5
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -1
Query: 178 NEIYCISVTFINNVSHFILLLFKERSYCTC 89
+ YCI FIN F L K +C C
Sbjct: 359 SSFYCIMADFINLYHDFELWEQKINCFCFC 388
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 128 EMGNIVNESYRDAVNFIEEQRRKIEDDVSDDT 223
+ NI V F+E ++ KI +D++D+T
Sbjct: 420 QFSNINRVEQSALVAFLESKQIKIHNDLADET 451
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 143 VNESYRDAVNFIEEQRRKIEDDVSDDTYKIDTKW 244
+ ES+ D + EE+RRK + + +++ Y + +W
Sbjct: 385 IPESFSDEQAYYEEKRRKDQLE-AEEYYARERRW 417
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 23.0 bits (47), Expect = 7.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 170 NFIEEQRRKIEDDVSDD 220
+FI+E +RK + D+SDD
Sbjct: 242 HFIQEFKRKQKIDISDD 258
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 23.0 bits (47), Expect = 7.2
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +2
Query: 65 FQEFFQDQTSAVRSFFEEQQNEMGNIVNESYRDAVNFIEEQRRKIEDDVSDD 220
F+ F ++ S++ F ++ ++ NIV + ++ R I+ +VSD+
Sbjct: 768 FRPEFLNRISSIVIFNRLRRVDIRNIVENRILEVQKRLQSNHRSIKIEVSDE 819
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 23.0 bits (47), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 13 NFITNNPRTSYRTVFMAVPRILSRSNKCSKI 105
NF NN + +VPRIL+ K SK+
Sbjct: 389 NFSYNNSEAVLQIFAQSVPRILNIEAKKSKL 419
>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 276
Score = 23.0 bits (47), Expect = 7.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 134 PFHSVALQRKILLHLFDLERILGTAMKTVL*EVRGLLVI 18
P H + R HLFD+E G +K +RG ++
Sbjct: 103 PLHGEIISRYSKAHLFDVEIKNGPTLKESNTTLRGEAIL 141
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 128 EMGNIVNESYRDAVNFIEEQRRKIEDD 208
E+GN+++ +AV I E R E+D
Sbjct: 410 EIGNLISSKGSEAVKQINEYIRPSEED 436
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 23.0 bits (47), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 110 FEEQQNEMGNIVNESYRDAVNFIEEQRRKIEDDVSDDTY 226
F+E +E+ ++ ESY+D+ ++ R + SD Y
Sbjct: 201 FDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEY 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 953,669
Number of Sequences: 5004
Number of extensions: 15178
Number of successful extensions: 65
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -