Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O06
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             27   0.94 
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.6  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   2.2  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   5.0  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    25   5.0  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    24   8.8  

>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 192 CTYHP--KNHYNDTFAKNCGSIASL 260
           CT++P      NDT  KNC SI SL
Sbjct: 355 CTFNPIFDELVNDTSTKNCSSIGSL 379


>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 224 YVRKELRIDRFLKLIICTCEFNIVRIYNMHR 316
           Y RK  RI R +  I   CE   V+IYN+ R
Sbjct: 17  YRRKTARIRRKVSEIEKECEMYAVKIYNVER 47


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 133 CVVLSGRFFRFSWWG 89
           CVV +G    FSWWG
Sbjct: 750 CVVYTGGSSNFSWWG 764


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 108 KKRPLKTTQPYYLARFSAMRRPTTPIYICTYHPKNHYNDTFAKNC 242
           K+R L+ T  +YL R   M   +TP+ +     K     TFA  C
Sbjct: 172 KRRSLRYTDTHYLERERVMSIKSTPLTLAVSDMK---GKTFAFQC 213


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 175 PHPYTFAHIIPKTIITIRSQRIADRS 252
           P  Y F++I+P  + TI S+ + +RS
Sbjct: 80  PVLYLFSYILPSKLFTIFSRSLVNRS 105


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 370 HSNILGPNYY*AYYDRFNAMHIINSDYIK 284
           HSN+L P +   Y+ RF+   +   DY++
Sbjct: 639 HSNLLNPEWLMNYFSRFSPDEVY--DYLR 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,009
Number of Sequences: 5004
Number of extensions: 36353
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)