Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O06
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    30   0.71 
08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294     27   6.6  
11_06_0351 - 22577666-22577989,22578282-22578676,22578961-225793...    27   8.7  

>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 342 IRHIMIGSMRCIL*-ILTILNSQVQIINLRKRSIRNSLRTYRYNGFWDDMCK 190
           IR I I S  C+L  ILT +   V  +N+R+     SL T  YNG   ++CK
Sbjct: 304 IRDISILSRLCLLRGILTAIPRTV--LNMRQLHSNGSLWTMLYNGILPELCK 353


>08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294
          Length = 358

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 113 LLPLQLVG--FPPPLSPSVSGACLLCRLLLNDSGFPLH 6
           L  L L G  FPPP  PS  G   L +L L++   P H
Sbjct: 139 LSSLSLAGCTFPPPQPPSFVGFLKLTKLSLSEVELPPH 176


>11_06_0351 -
           22577666-22577989,22578282-22578676,22578961-22579308,
           22579449-22579583,22579664-22579731,22579804-22579869,
           22579970-22580041,22580143-22580286,22580392-22580463,
           22580805-22580872
          Length = 563

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = -3

Query: 152 PSEVVRLRSFKRSLLPLQLVGFPPPLSPSVSGACLLCRLLLNDS 21
           PS V+++   KR+L    L GF   LSPS+     L +LLLND+
Sbjct: 15  PSVVIKI---KRTLSSSGLSGF---LSPSIGKLLYLQQLLLNDN 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,920,191
Number of Sequences: 37544
Number of extensions: 229867
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)