Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O05
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    27   2.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   3.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   3.7  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   4.8  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   6.4  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         25   8.4  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   8.4  
SPBC685.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
 Frame = +3

Query: 33  NGTYYDFETLHEDLDRPFLLAVDHSTN--------VIYFSYSIKVDEDEFRSARLNLNTK 188
           N +  DF+TL   L R  LL+   S N        ++Y + SI VDEDE   A +    K
Sbjct: 434 NKSERDFDTLSH-LQRQLLLSAIDSVNADSKTGGFIVYSTCSITVDEDE---AVIQYALK 489

Query: 189 EFKNIEGVNNG 221
           +  N++ V+ G
Sbjct: 490 KRPNVKLVSTG 500


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 102 HSTNVIYFSYSIKVDEDEFRSARLNLNTKEFKNIEGV 212
           +   ++Y  Y ++ +   F+SARLN     FKN E +
Sbjct: 51  NGVQILYAIYLLEKELARFKSARLNFCIVFFKNWEAL 87


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 268  EAMAYINTIMGTTKPNLSEQKMSTSGLYSS 357
            E+++ INT   T KP  S    +TSGL SS
Sbjct: 967  ESISSINTNSLTVKPESSLSSSTTSGLTSS 996


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 210 VNNGFAQTVDQKTHDIYIGG-SNGLYKYDYGNDKAEFIGAKDVNIWTIFFKDVLYYSTFP 386
           V++  A TV Q  H I   G S+ L  +   ND   F+G  +VNIW I   ++   STF 
Sbjct: 701 VDDSHAHTVIQGRHPIVEKGLSHKLIPFT-PNDC--FVGNGNVNIWLITGPNMAGKSTFL 757

Query: 387 SQ 392
            Q
Sbjct: 758 RQ 759


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 230 NGRPENSRYLYRWKQWLI*IRLWERQSRIYRSKRCQ 337
           N  PE +RY   W QW +   L +     Y S+ C+
Sbjct: 113 NWTPEKNRYGLIWNQWCL-SHLTDEDLIAYLSRCCE 147


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 180 NTKEFKNIEGVNNGFAQTVDQKTHDIYIGGSNGLYKYD 293
           NTK+ K  EGV  G +    Q+    Y+G + G  K D
Sbjct: 218 NTKDSKFCEGVEAGHSMQGTQEEIAKYLGITRGPTKMD 255


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 243 KTHDIYIGGSNGLYKYDYGNDKAEFIGAKDVNIWT 347
           + ++IY   SN     D  N++ EF+G    N++T
Sbjct: 152 RAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFT 186


>SPBC685.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 97

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 318 IGAKDVNIWTIFFKDVLYYSTFPSQFLYTFADGESRRFVD 437
           IG+ + N W     D L  +   +   Y FA+GE    V+
Sbjct: 44  IGSFEQNDWVAMENDALSKTIITNNTEYAFAEGEEPLLVE 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,724
Number of Sequences: 5004
Number of extensions: 32825
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)