Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_O05
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 31 0.52
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 29 1.6
03_01_0059 + 484305-484617,484919-485406,485608-486092,486185-48... 29 2.8
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 28 3.7
12_01_0549 + 4396159-4397327,4397341-4398353,4398609-4398676,439... 28 4.8
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 27 6.4
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 27 6.4
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 27 6.4
>03_01_0082 +
653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 31.1 bits (67), Expect = 0.52
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Frame = +3
Query: 87 LLAVDHSTNVIYFSYSIKVDEDEFRSARLNL-NTKEFKNIEGVNNGFAQTVDQKTHD--- 254
L+A D N+ F + + E E + N+ + FK G+++ + + T D
Sbjct: 594 LVAGDKKGNITAFHFPKVLVEHESCGTQQNMPSCDRFKGAHGISSVTSVRIITSTSDHLQ 653
Query: 255 IYIGGSNG---LYKYDYGNDKAEFIGAKDV-NIWTIFFKDVLYYSTFPSQFLYTFADG-E 419
I+ G +G +KYD K EF G + V + T+ + + Q L T+A G
Sbjct: 654 IHTTGGDGCICFFKYDRNVQKIEFFGMRQVKELGTV--QSIFPPHASEKQLLSTYAIGFT 711
Query: 420 SRRFV--DLE-DTKV 455
S F+ DLE +TK+
Sbjct: 712 SADFIIWDLENETKL 726
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +3
Query: 285 KYDYGNDKAEFIGAKDVNIWTIFFKDVLYYSTFPSQFLYTFADGESRRFVDLEDTKVDNF 464
K YGND E A+ V+ W +++ S P + + DGE + VD +DTK+ +
Sbjct: 582 KRKYGNDDYETKAAELVSSWQ---EEIKKPSWHPYKIITV--DGEDKEVVDDDDTKLRHL 636
Query: 465 VIDNED 482
I+ D
Sbjct: 637 WIEYGD 642
>03_01_0059 +
484305-484617,484919-485406,485608-486092,486185-486461,
486495-486626,486721-486893,486982-487204
Length = 696
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 180 NTKEFKNIEGVNNGFAQTVDQKTHDIYIGGSNGLYKYDYGNDKAEFI 320
N KEF N + ++ F D+ + I N + +DY D +E++
Sbjct: 603 NIKEFLNKQTADSMFLVCTDRASRGIDFANVNHVVLFDYPRDPSEYV 649
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 28.3 bits (60), Expect = 3.7
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Frame = +3
Query: 117 IYFSYSIKVDEDEFRSARLNLNTKEFKNIEGVNNGFAQT--VDQKT----HDIYIGGSNG 278
I+ +Y + V+ F R+ LN N++G QT V ++ +D+
Sbjct: 347 IFAAYHLVVETSFFEDQRVFLNDT---NVDGTPQITHQTSIVSNRSLPTDYDVTCTSRGS 403
Query: 279 LYKYDYGNDKAEFIGAKDVNIWTIFFKDVLYYSTFPSQFLYTFADGESRRFVDL 440
L +Y G+ KA + +T ++ PS+ L + G RRF+D+
Sbjct: 404 LLEYHDGDHKATVPFTNKPDSYTQDEGTAIHCEAPPSENLLSSVSGSLRRFIDI 457
>12_01_0549 +
4396159-4397327,4397341-4398353,4398609-4398676,
4399229-4399291
Length = 770
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 102 HSTNVIYFSYSIKVDEDEFRSARLNLNTKEFKNIEGVNNGFAQTVDQKTHDIYIGGSNGL 281
HS NV Y++ D E +A++ L K F + V+ +T D+ TH G NG+
Sbjct: 98 HSANVDPMQYTL--DNTEGVNAKVLL--KLFLT-DAVDRILLETEDRHTHQTEGNGLNGI 152
Query: 282 YKY 290
Y Y
Sbjct: 153 YNY 155
>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
Length = 502
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = +3
Query: 63 HEDLDRPFLLAVDHSTNVIYFSYSIKVDEDEFRSARLNLNTKEFKNIEGVNNGFAQTVDQ 242
HE L + + ++ T ++ S N + +EF+N G NNG +
Sbjct: 211 HETLTNLYEILMEDGTPTNDCGEGASAQDNSSYSGESNGDAEEFENQNGTNNGMVPEMKT 270
Query: 243 KTH 251
TH
Sbjct: 271 ITH 273
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 153 EFRSARLNLNTKEFKNIEGVNNGFAQTVDQKTHDI 257
+F SAR +L +K F+ E + + +TVD+ D+
Sbjct: 674 DFHSARTSLQSKSFRASEPLQSKIMKTVDELRGDL 708
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 66 EDLDRPFLLAVDHSTNVIYFSYSIKVDEDEFRSARLN 176
+ LDRPFL + +NV +V ED+ +S LN
Sbjct: 385 QPLDRPFLFPENGDSNVKNGENGSQVVEDDMQSVELN 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,337,621
Number of Sequences: 37544
Number of extensions: 180781
Number of successful extensions: 482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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