Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O04
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   168   3e-43
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   164   4e-42
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   1.9  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   4.4  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    25   5.8  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    24   7.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  168 bits (408), Expect = 3e-43
 Identities = 79/125 (63%), Positives = 93/125 (74%)
 Frame = +3

Query: 6   THLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAF 185
           +H+G++N+  +ME YV+KRR DG H+INL +TWEK           E+PADV VISSR +
Sbjct: 26  SHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPY 85

Query: 186 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNI 365
           G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D Q I EAS+VNI
Sbjct: 86  GHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNI 145

Query: 366 PVIAL 380
           PVIAL
Sbjct: 146 PVIAL 150


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  164 bits (399), Expect = 4e-42
 Identities = 74/124 (59%), Positives = 92/124 (74%)
 Frame = +3

Query: 9   HLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFG 188
           H+G++N+  +M+ YV+KRR DG H++NL +TWEK           E+PADV V+S+R +G
Sbjct: 26  HIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYG 85

Query: 189 QRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIP 368
            RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q I EAS+VNIP
Sbjct: 86  HRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIP 145

Query: 369 VIAL 380
           VIAL
Sbjct: 146 VIAL 149


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 347 FSNWLMILSRVQNNQQPWFA 288
           F N L+++ + Q+N++PW A
Sbjct: 498 FQNALLLVKKTQSNEKPWAA 517


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 287 PRTKAVDCFGPCSGSSTNY*SFICQHSSNSFIATL 391
           P  + + C    SGSST   +     S NSF+A+L
Sbjct: 351 PTRRHIPCSNKSSGSSTVLGNNSSSKSENSFLASL 385


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 282 AFREPRLLIVLDPAQDHQPITEASY 356
           A R+ RLL+++ P   H P+    Y
Sbjct: 62  AGRDDRLLLIVGPCSLHDPVAAKEY 86


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 137 DNSTSSEYKLFPCTPKINYVRTVT 66
           DNS SS    FP +PK++   TV+
Sbjct: 154 DNSISSNSDNFPPSPKVDTSNTVS 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,251
Number of Sequences: 5004
Number of extensions: 28490
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)