Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_O04
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   158   1e-39
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   157   2e-39
07_03_0771 - 21381276-21381461,21381583-21381733,21381823-213820...    31   0.45 
04_04_0157 + 23165638-23166633                                         28   2.4  
04_01_0304 + 4136261-4136294,4136360-4136436,4136555-4136634,413...    27   7.3  
10_08_0210 - 15874289-15875663,15878248-15879263                       26   9.7  
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813...    26   9.7  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  158 bits (384), Expect = 1e-39
 Identities = 73/123 (59%), Positives = 88/123 (71%)
 Frame = +3

Query: 9   HLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFG 188
           HLG +N +FQME YVYKRR DG ++INL +TWEK           E+P D+ V S+R +G
Sbjct: 28  HLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYG 87

Query: 189 QRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIP 368
           QRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP
Sbjct: 88  QRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIP 147

Query: 369 VIA 377
            IA
Sbjct: 148 TIA 150


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  157 bits (382), Expect = 2e-39
 Identities = 73/123 (59%), Positives = 88/123 (71%)
 Frame = +3

Query: 9   HLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFG 188
           HLG +N +FQME YVYKRR DG ++INL +TWEK           E+P D+ V S+R +G
Sbjct: 28  HLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYG 87

Query: 189 QRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIP 368
           QRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP
Sbjct: 88  QRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIP 147

Query: 369 VIA 377
            IA
Sbjct: 148 TIA 150


>07_03_0771 -
           21381276-21381461,21381583-21381733,21381823-21382060,
           21382161-21382368,21382650-21382777,21382892-21383029,
           21383160-21384012
          Length = 633

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -1

Query: 395 ESVLQ*SYYWNVDI*SFSNWLMILSRVQNNQQPWFAECGLDLVSKCTRSETSSN 234
           E V++  Y    D+ SF   ++ +   Q N  P+FAE   DLVS   R  T  N
Sbjct: 528 EYVIRGQYSTKSDVFSFGILILEIVTGQRNSGPYFAEQNEDLVSLVWRHWTEGN 581


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 109 FSHVRRRLITCVPSPRRL 56
           FSH+RRRL+  +P+P  L
Sbjct: 5   FSHLRRRLLAAIPNPNLL 22


>04_01_0304 +
           4136261-4136294,4136360-4136436,4136555-4136634,
           4137244-4137310,4137975-4138166,4138763-4139059
          Length = 248

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 260 IY*PDPSRIPRTKAV-DCFGPCSGSSTNY*SFICQ 361
           +Y P+PS IPR  A+  C  PC G+  ++ S  C+
Sbjct: 132 LYAPNPSLIPRVPALRPCHKPC-GAPPSHGSNTCE 165


>10_08_0210 - 15874289-15875663,15878248-15879263
          Length = 796

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 368 WNVDI*SFSNWLMILSRVQNNQQPWFAEC 282
           W +    FS+W  +L   +  +QPW+  C
Sbjct: 407 WEMTTYVFSDWTKVLLLCKFVEQPWWMRC 435


>05_04_0083 +
           17780665-17780764,17781070-17781124,17781193-17781313,
           17781361-17781429,17782047-17782274,17782477-17782666,
           17783303-17783694,17784380-17784427,17784816-17785400
          Length = 595

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 247 KRPAIGVAPVWAANLSTARWPNAR 176
           ++ A+  A  W  N    +WPNAR
Sbjct: 564 RQRAVAEAKTWGENSRERKWPNAR 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,067,589
Number of Sequences: 37544
Number of extensions: 202825
Number of successful extensions: 487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)