Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N22
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    28   0.84 
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   1.5  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   2.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.4  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   5.9  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.8  

>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = +3

Query: 285 KRNFDDPIEC-TGKNEFYMCGPA-CDNVCSELHEQNRTHCPILNIMCNRKCYCYDGYARD 458
           KR+  +P+   T  ++  +C  A C   CS+ + Q +TH P  N   + K          
Sbjct: 31  KRDIQNPLSYKTETSDKELCQTAACATSCSDWYPQQQTHMPHQNAFDSAKATAKMALPPT 90

Query: 459 E-NNVCIPVEQCKNPAI*TKTPR*RGFMYWPK 551
             +N C+     +N  I   + R     YW +
Sbjct: 91  AFSNYCVKPSLTRNKDIPRTSIRVSKLRYWQR 122


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 322 LPVHSIGSSKLRLCRGSTLSHSFSRTHMPLLF 227
           LPV  +GSS + L  G  LSHS S +H  +++
Sbjct: 71  LPVTHVGSSFVEL--GQALSHSSSNSHTYIMY 100


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 306 IECTGKNEFYMCGPACDNVCSELHE 380
           IECT ++   +CGP+C N   + HE
Sbjct: 156 IECTDEDN--VCGPSCQNQRFQRHE 178


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -2

Query: 335  VKLIFTGTFYWIIKIALVPRLNSVTFILANTYAIIVSNKTFFANTFYLTFLVMNATEFYI 156
            V L+F  T ++   IA     NS+  IL+  Y I +  K +  + +Y      N  +  +
Sbjct: 1280 VHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFFHSFWNMFDVVV 1339

Query: 155  TI 150
            T+
Sbjct: 1340 TL 1341


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 380 FMQFRADIITGGAAHVKLIFTGTFYWIIKIAL 285
           F++F    IT  + H  +IFT     ++KIAL
Sbjct: 708 FIEFLFHNITVSSKHTAVIFTSDLLMVLKIAL 739


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 336 MCGPACDNVCSELHEQNRTHCPILNIMCNRKCYCYDGY 449
           +CG AC N  +    ++  HC   N   N KC  + GY
Sbjct: 72  ICG-ACKNSLTVEEYRSTVHCKYCNHPFNPKCKNHAGY 108


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = -3

Query: 175 MQLNFISRFLQVLSGGQATTQSDFSLVPLHFNSCVL 68
           ++++ +SR +++L GG+ +++   +L+PL      L
Sbjct: 172 LEIDQLSRLVEILEGGEISSEILDTLLPLEIEDLAL 207


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 311 FYWIIKIALV-PRLNSVTFILANTYAIIVSNKTFFA 207
           F W + + L+   + ++ F + +TY I   NKTF A
Sbjct: 100 FCWTVLLPLIFKHVWNLNFKIGDTYTIHARNKTFTA 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,141
Number of Sequences: 5004
Number of extensions: 54974
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)