Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N22
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0615 - 30364956-30365729,30365813-30366286                       31   0.85 
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000...    29   2.0  
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762...    29   2.6  
07_01_0616 + 4560866-4560952,4561144-4561208,4564481-4564913,456...    29   3.4  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    28   6.0  
02_01_0552 + 4074001-4074341,4075118-4075257,4075647-4075838,407...    28   6.0  
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    28   6.0  
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268...    27   8.0  

>02_05_0615 - 30364956-30365729,30365813-30366286
          Length = 415

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 560 CSSFG-PVHETSLTWRFCLNGWIFTLFDGYAHVILISGVSIVTIAFSVAHN 411
           C  +G P  E+ L WR+  +G     FD  A + L+ G S+  +  SVA N
Sbjct: 97  CMKYGKPGLESILRWRWRPHGCDLPRFDAAAFLRLVRGKSMAFVGDSVARN 147


>03_06_0317 +
           33097257-33097336,33098500-33098926,33100007-33100078,
           33100490-33100600,33100973-33101173,33102157-33102222
          Length = 318

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 96  TNEKSDCVVACPPERTCKNRDIKFSCIHDQKCQ 194
           T+E+SD VV CPP+    +R+   S  +   CQ
Sbjct: 38  TDEESDGVVICPPDGNNDDREEAISSNNHDNCQ 70


>08_02_1159 +
           24773328-24773994,24775430-24775558,24776080-24776220,
           24777393-24777487,24777545-24778606
          Length = 697

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 426 KCYCYDGYARDE--NNVCIPVEQCKNPAI 506
           +CYC DGY  +   +  C  +++CK+P I
Sbjct: 204 RCYCSDGYEGNPYVDGGCRDIDECKSPHI 232


>07_01_0616 +
           4560866-4560952,4561144-4561208,4564481-4564913,
           4565634-4565786,4565875-4565946,4567602-4567712,
           4568344-4568584,4568743-4568821,4568892-4569018
          Length = 455

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 96  TNEKSDCVVACPPERTCKNRDIKFSCIHDQ 185
           T+++SDCVV CPP     + ++  S  HD+
Sbjct: 62  TDDESDCVVICPPNGKAGHTEV-MSGRHDE 90


>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
 Frame = +3

Query: 132 PERT--CKNRDIKFSCIHDQKCQIKC----VCKEGFIRNNNGICVRENECDRVEPRHK 287
           P RT  C+     F C H   C I C     C E  +    GIC  +    + +  HK
Sbjct: 169 PSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNKTTGICDPKGSTSQTKCFHK 226


>02_01_0552 +
           4074001-4074341,4075118-4075257,4075647-4075838,
           4077211-4077518
          Length = 326

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -1

Query: 387 CSVHAIQSRHYHRRGRTCKTH--FYRYILLDHQNCACAAAQLCH 262
           C V  +  + YHR+ R C+ H  F R ++   +   C      H
Sbjct: 73  CGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFH 116


>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 277 GSTLSHSFSRTHMPLLFLIKPSLQTH 200
           G+ LSHSFSR    L+F  + SL  H
Sbjct: 198 GAELSHSFSRNESTLIFGSQHSLDPH 223


>09_02_0533 -
           10325681-10326211,10326260-10326328,10326758-10326855,
           10326968-10327117,10327848-10327976,10328063-10328999
          Length = 637

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
 Frame = +3

Query: 366 SELHEQNRTHCPILNIMCNR-----KCYCYDGYARDE--NNVCIPVEQCKNP 500
           SE   ++   C   N  C+      KC+C DGY  +      C  +++CK+P
Sbjct: 269 SECTYESAPDCLSANSFCHAYDLGYKCHCSDGYQGNPYIRGGCHDIDECKSP 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,853,839
Number of Sequences: 37544
Number of extensions: 350847
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)