Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N21
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1552 - 34355544-34355613,34356099-34356282,34356829-343569...    33   0.18 
08_01_0876 - 8598664-8599374                                           31   0.72 
12_01_0849 + 7948693-7948996,7949829-7950610                           30   1.3  

>04_04_1552 -
           34355544-34355613,34356099-34356282,34356829-34356922,
           34357006-34357124,34357623-34357689,34359185-34359265,
           34359267-34359413
          Length = 253

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -1

Query: 121 ARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGP 20
           A T +RR P  P    R R G RAR  PP R  P
Sbjct: 6   AATAHRRKPSAPRLTVRHRLGYRARLAPPVRHTP 39


>08_01_0876 - 8598664-8599374
          Length = 236

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 115 TRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRAR 11
           T +  +P  P   P+SRRG R     P RRGPR R
Sbjct: 159 TMDGAAPLLPETSPKSRRGRRGGRRSP-RRGPRTR 192


>12_01_0849 + 7948693-7948996,7949829-7950610
          Length = 361

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 127 LPARTRNRRSPGCPTADPRSRRGLRARPEP 38
           LP R R    PG P+  P  RR  R+RP P
Sbjct: 254 LPRRRRVALHPGFPSVSPERRRLRRSRPPP 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,253,125
Number of Sequences: 37544
Number of extensions: 152292
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)