Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N21
         (613 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein.     31   2.4  
Z85986-1|CAI19115.1|  164|Homo sapiens splicing factor, arginine...    30   7.4  
L10838-1|AAA36648.1|  164|Homo sapiens pre-mRNA splicing factor ...    30   7.4  
BT007017-1|AAP35663.1|  164|Homo sapiens splicing factor, argini...    30   7.4  
BC069018-1|AAH69018.1|  164|Homo sapiens splicing factor, argini...    30   7.4  
BC000914-1|AAH00914.1|  164|Homo sapiens splicing factor, argini...    30   7.4  
AL138752-6|CAI13878.1|  559|Homo sapiens WD repeat domain 32 pro...    30   7.4  
AF107405-1|AAD44523.1|  164|Homo sapiens pre-mRNA splicing facto...    30   7.4  
BC048196-1|AAH48196.1|  256|Homo sapiens GIT1 protein protein.         29   9.8  

>AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein.
          Length = 1134

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -1

Query: 130  SLPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPR 17
            +LPA    R+ P    A PR RR     P  P RRGPR
Sbjct: 1011 TLPAARTMRQPPPPRLALPRRRRSPPRPPSRPARRGPR 1048


>Z85986-1|CAI19115.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 118 RTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRAR 11
           R+RNR  P  P+   R R   R R  PP RR PR R
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRR 119


>L10838-1|AAA36648.1|  164|Homo sapiens pre-mRNA splicing factor
           protein.
          Length = 164

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 118 RTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRAR 11
           R+RNR  P  P+   R R   R R  PP RR PR R
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRR 119


>BT007017-1|AAP35663.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 118 RTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRAR 11
           R+RNR  P  P+   R R   R R  PP RR PR R
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRR 119


>BC069018-1|AAH69018.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 118 RTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRAR 11
           R+RNR  P  P+   R R   R R  PP RR PR R
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRR 119


>BC000914-1|AAH00914.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 118 RTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRAR 11
           R+RNR  P  P+   R R   R R  PP RR PR R
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRR 119


>AL138752-6|CAI13878.1|  559|Homo sapiens WD repeat domain 32
           protein.
          Length = 559

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 97  PGCPTADPRSRRGLRARPEPPCRR-GPRAR 11
           PG P +   S  G  + P PPCRR GP  R
Sbjct: 74  PGAPESSTASAPGEPSPPSPPCRRPGPDCR 103


>AF107405-1|AAD44523.1|  164|Homo sapiens pre-mRNA splicing factor
           protein.
          Length = 164

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 118 RTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRAR 11
           R+RNR  P  P+   R R   R R  PP RR PR R
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRR 119


>BC048196-1|AAH48196.1|  256|Homo sapiens GIT1 protein protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 124 PARTRNRRSPGCPTADPR-SRRGLRARPEPPCRRGPRARL 8
           P     RR PG P A P  ++R   A P    R+GPRA +
Sbjct: 51  PGSRGRRRRPGPPPAPPTLAQRAAAASPLRMSRKGPRAEV 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,895,680
Number of Sequences: 237096
Number of extensions: 887691
Number of successful extensions: 3011
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3003
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)