Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N19
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   0.29 
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   1.6  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   4.8  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.8  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   6.3  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   6.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   6.3  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 23   YYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLN 160
            Y   ++++VP P  +PE   K + +  E  +  V +  E+DG++L+
Sbjct: 1139 YLFEIIDVVPQPG-RPETRHKLKLVTREEIKGTVAVVCEVDGYLLS 1183


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 14  NPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQE 118
           N  YY  L      PW K + T+ TRA + E+ +E
Sbjct: 462 NGHYYALLKTEKDGPWYKYDDTRVTRATLREVLEE 496


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 127 GDRLLAYFFHDSSCF-LSHFWFCPRRW 50
           G RLL Y+F+D  CF L++      RW
Sbjct: 204 GGRLLDYYFNDLVCFDLNNLNTSDSRW 230


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 61  PRRWNYLYKWHVV 23
           PR W++ YKW +V
Sbjct: 97  PRNWSHSYKWWIV 109


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 108 ISSMIALVFLVTSGFVH 58
           +SSMI + FL+T GF++
Sbjct: 441 LSSMITMTFLLTFGFIN 457


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 317 DNYIDRYGETIHNVSNTFGP 376
           +NY+D   ET+ N+++T+ P
Sbjct: 217 ENYVDSAIETVININSTYPP 236


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 269 AFLGSLETAHLNAEGMDNYIDRYGETIHNVSN 364
           AFL ++E  HLN E   ++ D + ++  N+ +
Sbjct: 157 AFLQAVENGHLNHEMFTSFTDIFFKSYQNLES 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,308
Number of Sequences: 5004
Number of extensions: 31146
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)