Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N19
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-11|ABQ13050.1|  284|Caenorhabditis elegans Hypothetical...   136   6e-33
AC024201-10|ABQ13051.1|  281|Caenorhabditis elegans Hypothetical...   131   2e-31
AF039046-12|AAB94215.1|  299|Caenorhabditis elegans Hydroxy-acyl...    38   0.003
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z78540-3|CAB01735.2|  482|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U10402-4|AAK95873.1|  255|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U88178-7|ABA03111.1|  439|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF039040-5|AAB94181.2|  472|Caenorhabditis elegans Hypothetical ...    27   5.5  
AC006676-2|AAK71382.3|  439|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AC024201-11|ABQ13050.1|  284|Caenorhabditis elegans Hypothetical
           protein Y71F9B.9a protein.
          Length = 284

 Score =  136 bits (329), Expect = 6e-33
 Identities = 63/132 (47%), Positives = 79/132 (59%)
 Frame = +2

Query: 5   HPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNRIQYAILG 184
           HPVNPP ++PL E+VPAPWT  +   +   IM  + QEPV L +E+ GFV+NR+Q+A+L 
Sbjct: 112 HPVNPPLFLPLTELVPAPWTSQDTVDRAAEIMRSVKQEPVKLKKEVLGFVVNRLQFALLA 171

Query: 185 EVWRLVDEXXXXXXXXXXXXSEGLGMRYAFLGSLETAHLNAEGMDNYIDRYGETIHNVSN 364
           E WRLV +            S GLG RYAF G+ ET HLNA G+ +Y  RY   I  V  
Sbjct: 172 ETWRLVADGVIGVNDVDAVMSAGLGPRYAFNGTCETVHLNAFGVRDYFKRYAAGITAVLK 231

Query: 365 TFGPIPKMTTNK 400
             GPIP  T  K
Sbjct: 232 DMGPIPDFTDEK 243


>AC024201-10|ABQ13051.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71F9B.9b protein.
          Length = 281

 Score =  131 bits (316), Expect = 2e-31
 Identities = 61/132 (46%), Positives = 79/132 (59%)
 Frame = +2

Query: 5   HPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNRIQYAILG 184
           HPVNPP ++PL E+VPAPWT  +   +   IM  + QEPV L +E+ GFV+NR+Q+A+L 
Sbjct: 112 HPVNPPLFLPLTELVPAPWTSQDTVDRAAEIMRSVKQEPVKLKKEVLGFVVNRLQFALLA 171

Query: 185 EVWRLVDEXXXXXXXXXXXXSEGLGMRYAFLGSLETAHLNAEGMDNYIDRYGETIHNVSN 364
           E WRLV +            S GLG RYAF G+ ET HLNA G+ +Y  RY      ++ 
Sbjct: 172 ETWRLVADGVIGVNDVDAVMSAGLGPRYAFNGTCETVHLNAFGVRDYFKRYAA---GITA 228

Query: 365 TFGPIPKMTTNK 400
             GPIP  T  K
Sbjct: 229 DMGPIPDFTDEK 240


>AF039046-12|AAB94215.1|  299|Caenorhabditis elegans
           Hydroxy-acyl-coa dehydrogenaseprotein 1 protein.
          Length = 299

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
 Frame = +2

Query: 5   HPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNRIQYAILG 184
           H  NP   + LVE+V    T PE T       +EI + PV  +++  GF++NR+    L 
Sbjct: 156 HFFNPVPVMKLVEVVSTDETSPETTNFLFNFCKEIKKLPVA-AKDTPGFIVNRLLIPYLM 214

Query: 185 EVWRLVDEXXXXXXXXXXXXSEGLGMRYAFLGSLETA-HLNAEGMDNYIDRYGETIHNVS 361
           +  R+++                 G  Y  +G +E   ++  + + + +  + ETI   +
Sbjct: 215 DSIRMLERGDATKEDIDTAMR--FGTSYP-MGPIELCDYVGLDVLQSTLKIFRETIPGDA 271

Query: 362 NTFGPIPKM 388
             F PIP M
Sbjct: 272 R-FAPIPLM 279


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 8   PVNPPYYVPLVEIVPAP 58
           PV+PP  VP+  IVPAP
Sbjct: 708 PVSPPVIVPIDSIVPAP 724


>Z78540-3|CAB01735.2|  482|Caenorhabditis elegans Hypothetical
           protein C33G3.5 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 50  PAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLN 160
           P+P T+P  T +T A+  +  Q  VT++ E     LN
Sbjct: 304 PSPSTEPSSTLRTSAVTPDSIQSTVTMTAEYKATTLN 340


>U10402-4|AAK95873.1|  255|Caenorhabditis elegans Hypothetical
           protein C34E10.11 protein.
          Length = 255

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 8   PVNPPYYVPLVEIVPAPWTKPE 73
           P+ PP    L  +V APW KPE
Sbjct: 47  PILPPSKKVLYHVVHAPWQKPE 68


>U88178-7|ABA03111.1|  439|Caenorhabditis elegans Hypothetical
           protein W09C3.1 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +2

Query: 23  YYVPLVEI-VPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFV-----LNRIQYAILG 184
           ++  L+E+  P PWT   + ++  A+ E+   E ++    +  F+     LN +QYA   
Sbjct: 226 WFFMLMEMYAPLPWTSSNIPERIEALKEDHLNEYLSKDSFLSSFLPLVEYLNSVQYADRP 285

Query: 185 EVWRLVD 205
           +  ++ D
Sbjct: 286 DYMKIYD 292


>AF039040-5|AAB94181.2|  472|Caenorhabditis elegans Hypothetical
           protein T22B11.1 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 131 SREIDGFVLNRIQYAILGEVWR 196
           S +ID F+LN  Q+A + E+W+
Sbjct: 107 SEQIDEFLLNPSQFARVSEIWQ 128


>AC006676-2|AAK71382.3|  439|Caenorhabditis elegans Hypothetical
           protein M04F3.3 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +2

Query: 23  YYVPLVEI-VPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFV-----LNRIQYAILG 184
           ++  L+E+  P PWT   + ++  A+ E+   E ++    +  F+     LN +QYA   
Sbjct: 226 WFFMLMEMYAPLPWTSSNIPERIEALKEDHLNEYLSKDSFLSSFLPLVEYLNSVQYADRP 285

Query: 185 EVWRLVD 205
           +  ++ D
Sbjct: 286 DYMKIYD 292


>Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 82  ENKSYHGRNRPRACHPIKRNRWI 150
           E   YH + RPR C   K  +W+
Sbjct: 588 EGNDYHLQLRPRGCETEKEKKWL 610


>Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 82  ENKSYHGRNRPRACHPIKRNRWI 150
           E   YH + RPR C   K  +W+
Sbjct: 588 EGNDYHLQLRPRGCETEKEKKWL 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,043,376
Number of Sequences: 27780
Number of extensions: 170813
Number of successful extensions: 460
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)