Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_N18
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   243   4e-65
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   238   1e-63
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...   125   1e-29
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.       121   2e-28
AL132865-7|CAB60598.1|  234|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z32683-10|CAA83625.1|  381|Caenorhabditis elegans Hypothetical p...    28   3.1  
AC006701-3|AAF60394.2|  198|Caenorhabditis elegans Mediator prot...    27   5.5  
AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score =  243 bits (595), Expect = 4e-65
 Identities = 104/138 (75%), Positives = 124/138 (89%)
 Frame = +1

Query: 1   QMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARK 180
           Q+CLSKSPNKHNRL   AQPMP+GL +DI+ G VN RD+FK RA+ L++KYEYD+TEARK
Sbjct: 583 QICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEARK 642

Query: 181 IWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYDVT 360
           IWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EG +++EN+RGVRFN++DVT
Sbjct: 643 IWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVT 702

Query: 361 LHTDAIHRGGGQIIPTTR 414
           LH DAIHRGGGQIIPT R
Sbjct: 703 LHADAIHRGGGQIIPTAR 720


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score =  238 bits (582), Expect = 1e-63
 Identities = 102/138 (73%), Positives = 122/138 (88%)
 Frame = +1

Query: 1   QMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARK 180
           Q+CLSKSPNKHNRL   AQPMP+GL +DI+ G V+ RD+FK RA+Y  +KYEY +TEARK
Sbjct: 583 QICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYAVTEARK 642

Query: 181 IWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYDVT 360
           IWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EG +++EN+RGVRFN++DVT
Sbjct: 643 IWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVT 702

Query: 361 LHTDAIHRGGGQIIPTTR 414
           LH DAIHRGGGQIIPT R
Sbjct: 703 LHADAIHRGGGQIIPTAR 720


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score =  125 bits (302), Expect = 1e-29
 Identities = 57/140 (40%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
 Frame = +1

Query: 7    CLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIW 186
            C +++PNK N++ M A+P+ + L EDI++  V    + +    +   KY +DL  AR IW
Sbjct: 678  CFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIW 737

Query: 187  CFGPEGTGPNILVD----CSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYD 354
             FGP+ TGPNIL+D           L+ +++S+V GFQWA +EG + EE +R V+F + D
Sbjct: 738  AFGPDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLD 797

Query: 355  VTLHTDAIHRGGGQIIPTTR 414
              + T+ ++RGGGQ+IPT R
Sbjct: 798  AAIATEPLYRGGGQMIPTAR 817


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score =  121 bits (292), Expect = 2e-28
 Identities = 56/140 (40%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
 Frame = +1

Query: 7   CLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIW 186
           C +++PNK N++ M A+P+ + L EDI++  V    + +    +   KY +DL  AR IW
Sbjct: 553 CFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIW 612

Query: 187 CFGPEGTGPNILVD----CSKGVQYLNEIKDSVVAGFQWAAKEGAMAEENLRGVRFNIYD 354
            FG + TGPNIL+D           L+ +++S+V GFQWA +EG + EE +R V+F + D
Sbjct: 613 AFGLDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLD 672

Query: 355 VTLHTDAIHRGGGQIIPTTR 414
             + T+ ++RGGGQ+IPT R
Sbjct: 673 AAIATEPLYRGGGQMIPTAR 692


>AL132865-7|CAB60598.1|  234|Caenorhabditis elegans Hypothetical
           protein Y62E10A.10 protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +1

Query: 88  DDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKD 267
           ++G+  P+  F  R +YL  +    L++A++    GP    P+ + +  KG   +N I  
Sbjct: 61  ENGRFLPKTSFNARRQYLCAEETGYLSKAQQRPAKGPNPMDPSQMTEMLKG-NMMNMIPM 119

Query: 268 SVVAGF 285
            VV G+
Sbjct: 120 IVVGGW 125


>Z32683-10|CAA83625.1|  381|Caenorhabditis elegans Hypothetical
           protein R07E5.3 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 139 LSDKYEYDLTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGAMAE 318
           L D++E+D+++        PE    NI  +   G ++++ I  S+    QW  +  A +E
Sbjct: 271 LVDQFEWDMSDPNN----SPEEFSRNICKELGLGGEFMSGIAYSIRGQLQWNQRTYAFSE 326

Query: 319 ENLRGV 336
             L  V
Sbjct: 327 SPLATV 332


>AC006701-3|AAF60394.2|  198|Caenorhabditis elegans Mediator protein
           20 protein.
          Length = 198

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 405 WNDLTATSVNGVSVKGDVINVESNPSQVLL 316
           W     T+  G +VKG V+ +E +PS +++
Sbjct: 115 WMIRVGTATQGTTVKGVVVEIEYDPSIIVI 144


>AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical
           protein Y19D10B.4 protein.
          Length = 881

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 357 DVINVESNPSQVLLGHGAFLGGPLEPGDDRVLDLVQVLHTLRA 229
           +VI V+  P  V +G+G      L+   D   DLV +L T+R+
Sbjct: 288 NVIGVQYFPENVQIGYGKTTDEQLQTYVDNDGDLVYILLTIRS 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,570,526
Number of Sequences: 27780
Number of extensions: 138037
Number of successful extensions: 518
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)