Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_N16
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 32 0.062
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 27 2.3
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 27 2.3
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 25 7.2
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 9.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.5
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 9.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.5
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ... 25 9.5
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 31.9 bits (69), Expect = 0.062
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 296 PPFARQLGNIPSTSHSRVYSPLHLLFIGLFVDLRMSLT 183
P + R+L S S+SR SPLH LF+ L + ++ +T
Sbjct: 762 PSYRRRLSMSCSVSYSRSPSPLHALFLALLLGIKDLMT 799
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 47 EYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHS 166
+YD++N DH H H + EA GHS
Sbjct: 21 DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +2
Query: 86 FTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVTYGDQQKVQ*TIDVTVNKH 247
+T H K KR ++ DPS R V KL+ DQ+ + NKH
Sbjct: 347 YTWHLCKSPFKRSTGNTNDNDDPSWRFRLFVKKLLKNRDQRSTPTELLKDFNKH 400
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 467 SILVPTPFQCLISNSWACSK 526
++ + T F CL+ WACSK
Sbjct: 19 ALAIMTGFPCLMYYLWACSK 38
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 24.6 bits (51), Expect = 9.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 347 IDGTSMAIAAHTRFLHCSSHKQNTM*--NEATLKINQVLPAKSILVPTPFQCLISNSWA- 517
I+ S+AIA RF SH + + NE + ++V + + F CL + W+
Sbjct: 20 IEDFSLAIA--NRFKQMGSHSDSEVDWDNEEEVWEDEVHEFCCLFCDSTFTCL-KDLWSH 76
Query: 518 CSKAHNY 538
C +AHN+
Sbjct: 77 CKEAHNF 83
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 329 SLPCSEIDGTSMAIAAHTRFLHCSSHKQNTM*NEATLKINQVLPAKSILVPTPFQCLISN 508
S SE+DG + A+ ++CS + + E+T ++ + K L TP + ++
Sbjct: 1553 SFLASEMDGECVCCASFANCVYCSRCSDSLLGEEST--VSTMYGVKPTLPETPKPAIATH 1610
Query: 509 S 511
S
Sbjct: 1611 S 1611
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 244 TRLWLVEGILPSCLAKGGRYG 306
T WL EG+ P C+ + ++G
Sbjct: 440 TESWLKEGLRPRCITRDLKWG 460
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 329 SLPCSEIDGTSMAIAAHTRFLHCSSHKQNTM*NEATLKINQVLPAKSILVPTPFQCLISN 508
S SE+DG + A+ ++CS + + E+T ++ + K L TP + ++
Sbjct: 1553 SFLASEMDGECVCCASFANCVYCSRCSDSLLGEEST--VSTMYGVKPTLPETPKPAIATH 1610
Query: 509 S 511
S
Sbjct: 1611 S 1611
>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 139 ESLRPLWTF*KDRHEVSDIRRSTK 210
+S +PLW++ + EV R+S K
Sbjct: 211 DSFKPLWSWHNSKSEVKKTRKSKK 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,138
Number of Sequences: 5004
Number of extensions: 43661
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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